Publications by authors named "James A Hay"

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Revealing trends in measles immunity during periods of varying measles circulation in Madagascar.
Arthur Menezes, James A Hay, Richter Razafindratsimandresy, Andriamasina Herivelo Randriamanantena, Luojun Yang

Am J Epidemiol· December 2025

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Multiplex serology reveals age-specific immunodynamics of respiratory pathogens in the wake of the COVID-19 pandemic.
Samantha J Bents, Emily T Martin, Terry Stevens-Ayers, Claire Andrews, Amanda Adler, James A Hay

Nat Commun· December 2025

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Nowcasting epidemic trends using hospital- and community-based virologic test data.
Tse Yang Lim, Sanjat Kanjilal, Shira Doron, Jessica A Penney, Meredith Haddix, James A Hay

Nat Commun· November 2025

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Sex differences in antibody responses to influenza A/H3N2 across the life course.
Siyu Chen, Bernardo García-Carreras, James A Hay, Huachen Zhu, Chao Qiang Jiang

Res Sq· November 2025

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Generalizing population RT-qPCR cycle threshold values-informed estimation of epidemiological dynamics: Impact of surveillance practices and pathogen variability.
Yun Lin, James A Hay, Yu Meng, Benjamin J Cowling, Bingyi Yang

PLoS Comput Biol· September 2025

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Enhanced testing can substantially improve defense against several types of respiratory virus pandemic.
James Petrie, James A Hay, Oraya Srimokla, Jasmina Panovska-Griffiths, Charles Whittaker

Epidemics· March 2025

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Multiplex serology reveals age-specific immunodynamics of endemic respiratory pathogens in the wake of the COVID-19 pandemic.
Samantha J Bents, Emily T Martin, Terry Steven-Ayers, Claire Andrews, Amanda Adler, James A Hay

medRxiv· March 2025

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Serodynamics: A primer and synthetic review of methods for epidemiological inference using serological data.
James A Hay, Isobel Routledge, Saki Takahashi

Epidemics· December 2024

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COVID-19 testing and reporting behaviours in England across different sociodemographic groups: a population-based study using testing data and data from community prevalence surveillance surveys.
Sumali Bajaj, Siyu Chen, Richard Creswell, Reshania Naidoo, Joseph L-H Tsui, James A Hay

Lancet Digit Health· November 2024

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Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course.
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On Kwok, Ruiyin Shen

PLoS Biol· November 2024

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Infectious disease surveillance needs for the United States: lessons from Covid-19.
Marc Lipsitch, Mary T Bassett, John S Brownstein, Paul Elliott, David Eyre, James A Hay

Front Public Health· July 2024

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Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course.
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On Kwok, Ruiyin Shen

medRxiv· April 2024

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Viral kinetics of sequential SARS-CoV-2 infections.
Stephen M Kissler, James A Hay, Joseph R Fauver, Christina Mack, Caroline G Tai

Nat Commun· October 2023

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serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes.
Arthur Menezes, Saki Takahashi, Isobel Routledge, C Jessica E Metcalf, Andrea L Graham, James A Hay

PLoS Comput Biol· August 2023

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Alternative epidemic indicators for COVID-19 in three settings with incomplete death registration systems.
Ruth McCabe, Charles Whittaker, Richard J Sheppard, Nada Abdelmagid, Aljaile Ahmed, James A Hay

Sci Adv· June 2023

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Long term intrinsic cycling in human life course antibody responses to influenza A(H3N2): an observational and modeling study.
Bingyi Yang, Bernardo García-Carreras, Justin Lessler, Jonathan M Read, Huachen Zhu, James A Hay

Elife· December 2022

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Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: A retrospective cohort study.
James A Hay, Stephen M Kissler, Joseph R Fauver, Christina Mack, Caroline G Tai

Elife· November 2022

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Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data.
Pablo M De Salazar, Fred Lu, James A Hay, Diana Gómez-Barroso, Pablo Fernández-Navarro

PLoS Comput Biol· March 2022

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Correction: Practical considerations for measuring the effective reproductive number, Rt.
Katelyn M Gostic, Lauren McGough, Edward B Baskerville, Sam Abbott, Keya Joshi, James A Hay

PLoS Comput Biol· December 2021

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Estimating epidemiologic dynamics from cross-sectional viral load distributions.
James A Hay, Lee Kennedy-Shaffer, Sanjat Kanjilal, Niall J Lennon, Stacey B Gabriel

Science· July 2021

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When intuition falters: repeated testing accuracy during an epidemic.
James A Hay, Joel Hellewell, Xueting Qiu

Eur J Epidemiol· July 2021

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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.
Nuno R Faria, Thomas A Mellan, Charles Whittaker, Ingra M Claro, Darlan da S Candido, James A Hay

Science· May 2021

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Estimation of Transmission of COVID-19 in Simulated Nursing Homes With Frequent Testing and Immunity-Based Staffing.
Inga Holmdahl, Rebecca Kahn, James A Hay, Caroline O Buckee, Michael J Mina

JAMA Netw Open· May 2021

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Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings.
Brian Cleary, James A Hay, Brendan Blumenstiel, Maegan Harden, Michelle Cipicchio

Sci Transl Med· April 2021

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Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil.
Nuno R Faria, Thomas A Mellan, Charles Whittaker, Ingra M Claro, Darlan da S Candido, James A Hay

medRxiv· March 2021

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