Publications by authors named "James D Boyko"

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Phylogenetic Context of Antibiotic Resistance Provides Insights into the Dynamics of Resistance Emergence and Spread.
Kyle J Gontjes, Aryan Singh, Sarah E Sansom, James D Boyko, Stephen A Smith

J Infect Dis· December 2025

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Uncertainty in joint Ancestral State Reconstruction: Improving accuracy and biological interpretability of ancestral state prediction.
James D Boyko, Kyle J Gontjes, Evan S Snitkin, Stephen A Smith

bioRxiv· October 2025

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Punctuated Versus Gradual Shifts in the Multivariate Evolutionary Process: A Test With Paired Radiations of Scincid Lizards.
Natasha Stepanova, James D Boyko, Jada Lin, Alison R Davis Rabosky, Daniel L Rabosky

Syst Biol· June 2025

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Phylogenetic context of antibiotic resistance provides insights into the dynamics of resistance emergence and spread.
Kyle J Gontjes, Aryan Singh, Sarah E Sansom, James D Boyko, Stephen A Smith

medRxiv· June 2025

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mvh: An R tool to assemble and organize virtual herbaria from openly available specimen images.
Thais Vasconcelos, James D Boyko

Appl Plant Sci· January 2025

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Investigating historical drivers of latitudinal gradients in polyploid plant biogeography: A multiclade perspective.
Eric R Hagen, Thais Vasconcelos, James D Boyko, Jeremy M Beaulieu

Am J Bot· August 2024

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The evolutionary responses of life-history strategies to climatic variability in flowering plants.
James D Boyko, Eric R Hagen, Jeremy M Beaulieu, Thais Vasconcelos

New Phytol· November 2023

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Reducing the Biases in False Correlations Between Discrete Characters.
James D Boyko, Jeremy M Beaulieu

Syst Biol· June 2023

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A novel method for jointly modeling the evolution of discrete and continuous traits.
James D Boyko, Brian C O'Meara, Jeremy M Beaulieu

Evolution· March 2023

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Models with unequal transition rates favor marine origins of Cyanobacteria and photosynthetic eukaryotes.
Teofil Nakov, James D Boyko, Andrew J Alverson, Jeremy M Beaulieu

Proc Natl Acad Sci U S A· December 2017

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