Publications by authors named "James D Malley"

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What makes a good prediction? Feature importance and beginning to open the black box of machine learning in genetics.
Anthony M Musolf, Emily R Holzinger, James D Malley, Joan E Bailey-Wilson

Hum Genet· September 2022

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Comparison of Juvenile Feed Protocols on Growth and Spawning in Zebrafish.
Stephen C Frederickson, Mark D Steinmiller, Tiffany Rae Blaylock, Mike E Wisnieski, James D Malley

J Am Assoc Lab Anim Sci· May 2021

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Detecting gene-gene interactions using a permutation-based random forest method.
Jing Li, James D Malley, Angeline S Andrew, Margaret R Karagas, Jason H Moore

BioData Min· April 2016

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r2VIM: A new variable selection method for random forests in genome-wide association studies.
Silke Szymczak, Emily Holzinger, Abhijit Dasgupta, James D Malley, Anne M Molloy

BioData Min· February 2016

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O brave new world that has such machines in it.
James D Malley, Karen G Malley, Jason H Moore

BioData Min· March 2015

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SCORHE: a novel and practical approach to video monitoring of laboratory mice housed in vivarium cage racks.
Ghadi H Salem, John U Dennis, Jonathan Krynitsky, Marcial Garmendia-Cedillos, Kanchan Swaroop, James D Malley

Behav Res Methods· March 2015

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Synthetic learning machines.
Hemant Ishwaran, James D Malley

BioData Min· January 2015

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Looking for childhood-onset schizophrenia: diagnostic algorithms for classifying children and adolescents with psychosis.
Deanna Greenstein, Rachna Kataria, Peter Gochman, Abhijit Dasgupta, James D Malley

J Child Adolesc Psychopharmacol· September 2014

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Probability estimation with machine learning methods for dichotomous and multicategory outcome: theory.
Jochen Kruppa, Yufeng Liu, Gérard Biau, Michael Kohler, Inke R König, James D Malley

Biom J· July 2014

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Comparative validation of the D. melanogaster modENCODE transcriptome annotation.
Zhen-Xia Chen, David Sturgill, Jiaxin Qu, Huaiyang Jiang, Soo Park, James D Malley

Genome Res· July 2014

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Innovation is often unnerving: the door into summer.
James D Malley, Jason H Moore

BioData Min· July 2014

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First complex, then simple.
James D Malley, Jason H Moore

BioData Min· July 2014

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A Simplified Basis for Bell-Kochen-Specker Theorems.
James D Malley, Arthur Fine

Phys Lett A· July 2014

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A system-level pathway-phenotype association analysis using synthetic feature random forest.
Qinxin Pan, Ting Hu, James D Malley, Angeline S Andrew, Margaret R Karagas

Genet Epidemiol· April 2014

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Risk estimation using probability machines.
Abhijit Dasgupta, Silke Szymczak, Jason H Moore, Joan E Bailey-Wilson, James D Malley

BioData Min· March 2014

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The disconnect between classical biostatistics and the biological data mining community.
James D Malley, Jason H Moore

BioData Min· July 2013

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The limits of p-values for biological data mining.
James D Malley, Abhijit Dasgupta, Jason H Moore

BioData Min· May 2013

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The clinical phenotypes of the juvenile idiopathic inflammatory myopathies.
Mona Shah, Gulnara Mamyrova, Ira N Targoff, Adam M Huber, James D Malley

Medicine (Baltimore)· January 2013

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Using multivariate machine learning methods and structural MRI to classify childhood onset schizophrenia and healthy controls.
Deanna Greenstein, James D Malley, Brian Weisinger, Liv Clasen, Nitin Gogtay

Front Psychiatry· October 2012

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Brief review of regression-based and machine learning methods in genetic epidemiology: the Genetic Analysis Workshop 17 experience.
Abhijit Dasgupta, Yan V Sun, Inke R König, Joan E Bailey-Wilson, James D Malley

Genet Epidemiol· May 2012

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Performance of random forests and logic regression methods using mini-exome sequence data.
Yoonhee Kim, Qing Li, Cheryl D Cropp, Heejong Sung, Juanliang Cai, James D Malley

BMC Proc· November 2011

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The behaviour of random forest permutation-based variable importance measures under predictor correlation.
Kristin K Nicodemus, James D Malley, Carolin Strobl, Andreas Ziegler

BMC Bioinformatics· February 2010

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Predictor correlation impacts machine learning algorithms: implications for genomic studies.
Kristin K Nicodemus, James D Malley

Bioinformatics· August 2009

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Clinical and immunogenetic prognostic factors for radiographic severity in ankylosing spondylitis.
Michael M Ward, Matthew R Hendrey, James D Malley, Thomas J Learch, John C Davis

Arthritis Rheum· July 2009

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Immunogenetic risk and protective factors for juvenile dermatomyositis in Caucasians.
Gulnara Mamyrova, Terrance P O'Hanlon, Jason B Monroe, Danielle Mercatante Carrick, James D Malley

Arthritis Rheum· December 2006

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