Publications by authors named "James D Stephenson"

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EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025.
Matthew Thakur, Nicolas Bosc, Cath Brooksbank, Christina Ernst, Mallory A Freeberg, James D Stephenson

Nucleic Acids Res· November 2025

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ProtVar: mapping and contextualizing human missense variation.
James D Stephenson, Prabhat Totoo, David F Burke, Jürgen Jänes, Pedro Beltrao

Nucleic Acids Res· July 2024

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Saturation genome editing of DDX3X clarifies pathogenicity of germline and somatic variation.
Elizabeth J Radford, Hong-Kee Tan, Malin H L Andersson, James D Stephenson, Eugene J Gardner

Nat Commun· December 2023

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Mapping the Constrained Coding Regions in the Human Genome to Their Corresponding Proteins.
Marcia A Hasenahuer, Alba Sanchis-Juan, Roman A Laskowski, James A Baker, James D Stephenson

J Mol Biol· January 2023

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VarSite: Disease variants and protein structure.
Roman A Laskowski, James D Stephenson, Ian Sillitoe, Christine A Orengo, Janet M Thornton

Protein Sci· January 2020

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VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations.
James D Stephenson, Roman A Laskowski, Andrew Nightingale, Matthew E Hurles, Janet M Thornton

Bioinformatics· November 2019

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Quantifying the contribution of recessive coding variation to developmental disorders.
Hilary C Martin, Wendy D Jones, Rebecca McIntyre, Gabriela Sanchez-Andrade, Mark Sanderson, James D Stephenson

Science· December 2018

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Evolution of ribozymes in the presence of a mineral surface.
James D Stephenson, Milena Popović, Thomas F Bristow, Mark A Ditzler

RNA· December 2016

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Characterizing 3D RNA structure by single molecule FRET.
James D Stephenson, Julia C Kenyon, Martyn F Symmons, Andrew M L Lever

Methods· July 2016

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Boron enrichment in martian clay.
James D Stephenson, Lydia J Hallis, Kazuhide Nagashima, Stephen J Freeland

PLoS One· January 2014

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Unearthing the root of amino acid similarity.
James D Stephenson, Stephen J Freeland

J Mol Evol· October 2013

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Three-dimensional RNA structure of the major HIV-1 packaging signal region.
James D Stephenson, Haitao Li, Julia C Kenyon, Martyn Symmons, Dave Klenerman

Structure· June 2013

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