Publications by authors named "James Jeffryes"

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Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions.
James G Jeffryes, Claudia Lerma-Ortiz, Filipe Liu, Alexey Golubev, Thomas D Niehaus

Metab Eng· January 2022

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver, Filipe Liu, Qizhi Zhang, James Jeffryes, José P Faria

Nucleic Acids Res· January 2021

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
Samuel M D Seaver, Filipe Liu, Qizhi Zhang, James Jeffryes, José P Faria

Nucleic Acids Res· January 2021

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Metabolic In Silico Network Expansions to Predict and Exploit Enzyme Promiscuity.
James Jeffryes, Jonathan Strutz, Chris Henry, Keith E J Tyo

Methods Mol Biol· June 2019

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A pathway for every product? Tools to discover and design plant metabolism.
James G Jeffryes, Samuel M D Seaver, José P Faria, Christopher S Henry

Plant Sci· August 2018

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Predicting novel substrates for enzymes with minimal experimental effort with active learning.
Dante A Pertusi, Matthew E Moura, James G Jeffryes, Siddhant Prabhu, Bradley Walters Biggs

Metab Eng· November 2017

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Metabolite damage and repair in metabolic engineering design.
Jiayi Sun, James G Jeffryes, Christopher S Henry, Steven D Bruner, Andrew D Hanson

Metab Eng· November 2017

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'Nothing of chemistry disappears in biology': the Top 30 damage-prone endogenous metabolites.
Claudia Lerma-Ortiz, James G Jeffryes, Arthur J L Cooper, Thomas D Niehaus, Antje M K Thamm

Biochem Soc Trans· June 2016

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MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.
James G Jeffryes, Ricardo L Colastani, Mona Elbadawi-Sidhu, Tobias Kind, Thomas D Niehaus

J Cheminform· August 2015

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A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis.
Océane Frelin, Lili Huang, Ghulam Hasnain, James G Jeffryes, Michael J Ziemak

Biochem J· February 2015

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