Publications by authors named "James Mork"

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Empirical Antonym Implementation in the UMLS SPECIALIST Lexicon.
Chris J Lu, Amanda Payne, James G Mork

Stud Health Technol Inform· August 2025

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Enhancing Automatic PT Tagging for MEDLINE Citations Using Transformer-Based Models.
Victor H Cid, James Mork

ArXiv· June 2025

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Assessing Artificial Intelligence (AI) Implementation for Assisting Gene Linking (at the National Library of Medicine).
Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Melanie Huston, Cathleen Coss, James G Mork

JAMIA Open· February 2025

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The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey.
Anastasia Krithara, James G Mork, Anastasios Nentidis, Georgios Paliouras

Front Res Metr Anal· September 2023

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The NLM indexer assignment dataset: a new large-scale dataset for reviewer assignment research.
Alastair R Rae, James G Mork, Dina Demner-Fushman

J Assoc Inf Sci Technol· February 2023

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Hybrid Ensemble-Rule Algorithm for Improved MEDLINE® Sentence Boundary Detection.
Daniel X Le, James G Mork, Sameer Antani

AMIA Annu Symp Proc· April 2022

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Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem.
Alastair R Rae, David O Pritchard, James G Mork, Dina Demner-Fushman

AMIA Annu Symp Proc· June 2021

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Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods".
Chris J Lu, Amanda Payne, James G Mork

J Am Med Inform Assoc· March 2021

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A High Recall Classifier for Selecting Articles for MEDLINE Indexing.
Alastair R Rae, Max E Savery, James G Mork, Dina Demner-Fushman

AMIA Annu Symp Proc· August 2020

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The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications.
Chris J Lu, Amanda Payne, James G Mork

J Am Med Inform Assoc· May 2020

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Chemical Entity Recognition for MEDLINE Indexing.
Max E Savery, Willie J Rogers, Malvika Pillai, James G Mork, Dina Demner-Fushman

AMIA Jt Summits Transl Sci Proc· May 2020

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Finding medication doses in the liteature.
Dina Demner-Fushman, James G Mork, Willie J Rogers, Sonya E Shooshan, Laritza Rodriguez

AMIA Annu Symp Proc· October 2019

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Extracting Characteristics of the Study Subjects from Full-Text Articles.
Dina Demner-Fushman, James G Mork

AMIA Annu Symp Proc· February 2017

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12 years on - Is the NLM medical text indexer still useful and relevant?
James Mork, Alan Aronson, Dina Demner-Fushman

J Biomed Semantics· February 2017

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Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study.
Kevin B Read, Jerry R Sheehan, Michael F Huerta, Lou S Knecht, James G Mork

PLoS One· May 2016

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Feature engineering for MEDLINE citation categorization with MeSH.
Antonio Jose Jimeno Yepes, Laura Plaza, Jorge Carrillo-de-Albornoz, James G Mork, Alan R Aronson

BMC Bioinformatics· April 2015

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Mining MEDLINE for problems associated with vitamin D.
Dina Demner-Fushman, James G Mork, Alan R Aronson

AMIA Annu Symp Proc· May 2014

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Comparison and combination of several MeSH indexing approaches.
Antonio Jose Jimeno Yepes, James G Mork, Dina Demner-Fushman, Alan R Aronson

AMIA Annu Symp Proc· May 2014

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MeSH indexing based on automatically generated summaries.
Antonio J Jimeno-Yepes, Laura Plaza, James G Mork, Alan R Aronson, Alberto Díaz

BMC Bioinformatics· June 2013

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GeneRIF indexing: sentence selection based on machine learning.
Antonio J Jimeno-Yepes, J Caitlin Sticco, James G Mork, Alan R Aronson

BMC Bioinformatics· May 2013

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A bottom-up approach to MEDLINE indexing recommendations.
Antonio Jimeno-Yepes, Bartłomiej Wilkowski, James G Mork, Elizabeth Van Lenten, Dina Demner Fushman

AMIA Annu Symp Proc· February 2013

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A retrospective cohort study of structured abstracts in MEDLINE, 1992-2006.
Anna M Ripple, James G Mork, Lou S Knecht, Betsy L Humphreys

J Med Libr Assoc· April 2011

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Extracting Rx information from clinical narrative.
James G Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang

J Am Med Inform Assoc· November 2010

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UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text.
Dina Demner-Fushman, James G Mork, Sonya E Shooshan, Alan R Aronson

J Biomed Inform· August 2010

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Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'.
Aurélie Névéol, James G Mork, Alan R Aronson

Bioinformatics· October 2009

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