Publications by authors named "James Shalaby"

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Genetic data normalization for genomic medicine: a Fast Healthcare Interoperability Resources Genomics reference implementation.
Robert H Dolin, Nicolae-Mihai Todor, James Shalaby, Huda Arsalan, Eshani Shah

J Am Med Inform Assoc· October 2025

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A FHIR-Powered Python Implementation of the SENECA Algorithm for Sepsis Subtyping.
Andrew J King, Christopher M Horvat, David Schlessinger, Harry Hochheiser, Kevin V Bui, James Shalaby

Appl Clin Inform· October 2025

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PillHarmonics: An Orchestrated Pharmacogenetics Medication Clinical Decision Support Service.
Robert H Dolin, Edna Shenvi, Carla Alvarez, Randolph C Barrows, Aziz Boxwala, James Shalaby

Appl Clin Inform· March 2024

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Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR-formatted genomic variants.
Robert Dolin, Bret S E Heale, Rohan Gupta, Carla Alvarez, Justin Aronson, James Shalaby

Learn Health Syst· October 2023

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Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration.
Robert H Dolin, Bret S E Heale, Gil Alterovitz, Rohan Gupta, Justin Aronson, James Shalaby

J Am Med Inform Assoc· February 2023

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Developing a shared sepsis data infrastructure: a systematic review and concept map to FHIR.
Emily B Brant, Jason N Kennedy, Andrew J King, Lawrence D Gerstley, Pranita Mishra, James Shalaby

NPJ Digit Med· April 2022

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vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration.
Robert H Dolin, Shaileshbhai R Gothi, Aziz Boxwala, Bret S E Heale, Ammar Husami, James Shalaby

BMC Bioinformatics· March 2021

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Lexical concept distribution reflects clinical practice.
Eugene Breydo, Maria Shubina, James W Shalaby, Jonathan S Einbinder, Alexander Turchin

AMIA Annu Symp Proc· July 2013

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Challenges in exchanging medication information: identifying gaps in clinical document exchange and terminology standards.
Shobha Phansalkar, George Robinson, George Getty, James Shalaby, David Tao

AMIA Annu Symp Proc· November 2009

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Kaiser Permanente's Convergent Medical Terminology.
Robert H Dolin, John E Mattison, Simon Cohn, Keith E Campbell, Andrew M Wiesenthal, James Shalaby

Stud Health Technol Inform· June 2005

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