Publications by authors named "James Urban"

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Bridging worlds: connecting glycan representations with glycoinformatics via Universal Input and a canonicalized nomenclature.
James Urban, Roman Joeres, Daniel Bojar

Bioinform Adv· December 2025

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Navigating the maze of mass spectra: a machine-learning guide to identifying diagnostic ions in O-glycan analysis.
James Urban, Roman Joeres, Luc Thomès, Kristina A Thomsson, Daniel Bojar

Anal Bioanal Chem· February 2025

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Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.
Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F Aoki-Kinoshita, Cecilia Arighi, James Urban

Database (Oxford)· August 2024

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Predicting glycan structure from tandem mass spectrometry via deep learning.
James Urban, Chunsheng Jin, Kristina A Thomsson, Niclas G Karlsson, Callum M Ives

Nat Methods· July 2024

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GlycoDraw: a python implementation for generating high-quality glycan figures.
Jon Lundstrøm, James Urban, Luc Thomès, Daniel Bojar

Glycobiology· December 2023

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Decoding glycomics with a suite of methods for differential expression analysis.
Jon Lundstrøm, James Urban, Daniel Bojar

Cell Rep Methods· December 2023

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Interband cascade laser absorption of hydrogen chloride for high-temperature thermochemical analysis of fire-resistant polymer reactivity.
Daniel I Pineda, James L Urban, R Mitchell Spearrin

Appl Opt· March 2020

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Rhodococcus phenolicus sp. nov., a novel bioprocessor isolated actinomycete with the ability to degrade chlorobenzene, dichlorobenzene and phenol as sole carbon sources.
Marc Rehfuss, James Urban

Syst Appl Microbiol· October 2005

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Alcaligenes faecalis subsp. phenolicus subsp. nov. a phenol-degrading, denitrifying bacterium isolated from a graywater bioprocessor.
Marc Rehfuss, James Urban

Syst Appl Microbiol· July 2005

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A mammalian cell regulatory agent, CeReS-18, inhibits yeast cell proliferation but not bacterial replication.
Ke An, Dustin B Urban, James E Urban, Terry C Johnson

Curr Microbiol· May 2003

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Assessment of bioaerosols in swine barns by filtration and impaction.
Bernardo Z Predicala, James E Urban, Ronaldo G Maghirang, Sheryll B Jerez, Robert D Goodband

Curr Microbiol· February 2002

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