Publications by authors named "Janet Hatt"

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Environmental exposures associated with the gut microbiome and resistome of pregnant women and children in Northwest Ecuador.
Irmarie Cotto, Viviana Albán, Ana Durán-Viseras, Kelsey J Jesser, Nicolette A Zhou, Janet K Hatt

Nat Commun· December 2025

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Decay and solid-liquid partitioning of mpox and vaccinia virus DNA in primary influent and settled solids to guide wastewater-based epidemiology practices.
Jacob R Phaneuf, Gyuhyon Cha, Janet K Hatt, Konstantinos T Konstantinidis, Katherine E Graham

Water Res· September 2025

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SourceApp: A Novel Metagenomic Source Tracking Tool that can Distinguish between Fecal Microbiomes Using Genome-To-Source Associations Benchmarked Against Mixed Input Spike-In Mesocosms.
Blake G Lindner, Katherine E Graham, Jacob R Phaneuf, Janet K Hatt, Konstantinos T Konstantinidis

Environ Sci Technol· May 2025

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Environmental Exposures and the Human Gut Resistome in Northwest Ecuador.
Irmarie Cotto, Ana Durán-Viseras, Kelsey J Jesser, Nicolette A Zhou, Caitlin Hemlock, Janet K Hatt

medRxiv· May 2025

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Promiscuous and genome-wide recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean.
Jianshu Zhao, Maria Pachiadaki, Roth E Conrad, Janet K Hatt, Laura A Bristow

ISME J· January 2025

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Quantifying the contribution of the rare biosphere to natural disturbances.
Jianshu Zhao, Genevieve Brandt, Jessica L Gronniger, Zhao Wang, Jiaqian Li, Janet K Hatt

ISME J· January 2025

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Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination.
Roth E Conrad, Catherine E Brink, Tomeu Viver, Luis M Rodriguez-R, Borja Aldeguer-Riquelme, Janet K Hatt

Nat Commun· November 2024

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Advancing Source Tracking: Systematic Review and Source-Specific Genome Database Curation of Fecally Shed Prokaryotes.
Blake G Lindner, Rakin A Choudhury, Princess Pinamang, Lilia Bingham, Isabelle D'Amico, Janet K Hatt

Environ Sci Technol Lett· September 2024

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Cold-chain free nucleic acid preservation using porous super-absorbent polymer (PSAP) beads to facilitate wastewater surveillance.
Gyuhyon Cha, Yixuan Huang, Katherine E Graham, Anjin Luo, Wensi Chen, Janet K Hatt

Sci Total Environ· August 2024

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Metagenomic insights into the impact of litter from poultry Concentrated Animal Feeding Operations (CAFOs) to adjacent soil and water microbial communities.
Ana Durán-Viseras, Blake G Lindner, Janet K Hatt, Amanda Lai, Robert Wallace

Sci Total Environ· April 2024

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Metagenomic evaluation of the performance of passive Moore swabs for sewage monitoring relative to composite sampling over time resolved deployments.
Gyuhyon Cha, Kevin J Zhu, Jamie M Fischer, Camryn I Flores, Joe Brown, Janet K Hatt

Water Res· April 2024

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A user's guide to the bioinformatic analysis of shotgun metagenomic sequence data for bacterial pathogen detection.
Blake G Lindner, Kenji Gerhardt, Dorian J Feistel, Luis M Rodriguez-R, Janet K Hatt

Int J Food Microbiol· January 2024

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Ecological success of extreme halophiles subjected to recurrent osmotic disturbances is primarily driven by congeneric species replacement.
Esteban Bustos-Caparros, Tomeu Viver, Juan F Gago, Luis M Rodriguez-R, Janet K Hatt

ISME J· January 2024

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Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement.
Michael H Woodworth, Roth E Conrad, Marina Haldopoulos, Stephanie M Pouch, Ahmed Babiker, Janet K Hatt

Sci Transl Med· November 2023

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Distribution of Escherichia coli Pathotypes along an Urban-Rural Gradient in Ecuador.
Lorena Montero, Shanon M Smith, Kelsey J Jesser, Maritza Paez, Estefanía Ortega, Janet K Hatt

Am J Trop Med Hyg· September 2023

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Parallel deployment of passive and composite samplers for surveillance and variant profiling of SARS-CoV-2 in sewage.
Gyuhyon Cha, Katherine E Graham, Kevin J Zhu, Gouthami Rao, Blake G Lindner, Janet K Hatt

Sci Total Environ· March 2023

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Higher pathogen load in children from Mozambique vs. USA revealed by comparative fecal microbiome profiling.
Minjae Kim, Luis M Rodriguez-R, Janet K Hatt, Osman Kayali, Rassul Nalá

ISME Commun· August 2022

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Quinone Moieties Link the Microbial Respiration of Natural Organic Matter to the Chemical Reduction of Diverse Nitroaromatic Compounds.
Osmar Menezes, Kumru Kocaman, Stanley Wong, Erika E Rios-Valenciana, Eliot J Baker, Janet K Hatt

Environ Sci Technol· July 2022

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Toward quantifying the adaptive role of bacterial pangenomes during environmental perturbations.
Roth E Conrad, Tomeu Viver, Juan F Gago, Janet K Hatt, Stephanus N Venter

ISME J· May 2022

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Metagenomics indicate that public health risk may be higher from flooding following dry versus rainy periods.
Minjae Kim, Yvonne Kienast, Janet K Hatt, Amy E Kirby, Konstantinos T Konstantinidis

Environ Microbiol Rep· April 2022

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Toward shotgun metagenomic approaches for microbial source tracking sewage spills based on laboratory mesocosms.
Blake G Lindner, Brittany Suttner, Kevin J Zhu, Roth E Conrad, Luis M Rodriguez-R, Janet K Hatt

Water Res· February 2022

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Microbial diversity in a military impacted lagoon (Vieques, Puerto Rico) and description of "Candidatus Biekeibacterium resiliens" gen. nov., sp. nov. comprising a new bacterial family.
Lizbeth Davila-Santiago, Natasha DeLeon-Rodriguez, Katia LaSanta-Pagán, Janet K Hatt, Zohre Kurt

Syst Appl Microbiol· January 2022

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A novel, divergent alkane monooxygenase (alkB) clade involved in crude oil biodegradation.
Smruthi Karthikeyan, Janet K Hatt, Minjae Kim, Jim C Spain, Markus Huettel

Environ Microbiol Rep· December 2021

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The influence of alfalfa-switchgrass intercropping on microbial community structure and function.
Gyuhyon Cha, Kelley A Meinhardt, Luis H Orellana, Janet K Hatt, Manmeet W Pannu

Environ Microbiol· November 2021

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Transcriptomic and rRNA:rDNA Signatures of Environmental versus Enteric Enterococcus faecalis Isolates under Oligotrophic Freshwater Conditions.
Brittany Suttner, Minjae Kim, Eric R Johnston, Luis H Orellana, Carlos A Ruiz-Perez, Janet K Hatt

Microbiol Spectr· October 2021

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