Publications by authors named "Janet Siebert"

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Agrarian diet improves metabolic health in HIV-positive men with -rich microbiomes: results from a randomized trial.
John B O'Connor, Jennifer Fouquier, Charles P Neff, John D Sterrett, Tyson Marden, Janet C Siebert

mSystems· December 2025

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Network-Based Multiomic Nutrient-Associated Predictive Models for Inflammatory Bowel Disease.
Martine Saint-Cyr, Evaniya Shakya, Janet C Siebert, Emily B Hill, Nancy F Krebs

Curr Dev Nutr· November 2025

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Agrarian Diet Improves Metabolic Health in HIV-positive Men with -Rich Microbiomes: Results from a Randomized Trial.
John B O'Connor, Jennifer Fouquier, Charles P Neff, John D Sterrett, Tyson Marden, Janet C Siebert

Res Sq· November 2024

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Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe.
Angela Sofia Burkhart Colorado, Alessandro Lazzaro, Charles Preston Neff, Nichole Nusbacher, Kathryn Boyd, Janet C Siebert

Microbiome· February 2024

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Evaluation of a minimal array of antigens as biomarkers for syphilis diagnosis, infection staging, and response to treatment.
Austin M Haynes, Kelika A Konda, Emily Romeis, Janet Siebert, Silver K Vargas

Microbiol Spectr· January 2024

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Antiretroviral treatment is less effective at reducing gut microbiome-associated inflammation and T cell activation in people living with HIV in rural versus urban Zimbabwe.
Alessandro Lazzaro, Angela Sofia Burkhart Colorado, Charles Preston Neff, Nichole Nusbacher, Kathryn Boyd, Janet Siebert

Res Sq· August 2023

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Elevated inflammatory fecal immune factors in men who have sex with men with HIV associate with microbiome composition and gut barrier function.
Katherine M Littlefield, Jennifer M Schneider, Charles P Neff, Victoria Soesanto, Janet C Siebert

Front Immunol· January 2023

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Proteomics, dietary intake, and changes in cardiometabolic health within a behavioral weight-loss intervention: A pilot study.
Emily B Hill, Janet C Siebert, Deaunabah N Yazza, Danielle M Ostendorf, Kristen Bing

Obesity (Silver Spring)· November 2022

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Discrete Plasma Cytokine Profiles Among Pregnant Women in Botswana by Chlamydia trachomatis Infection, Human Immunodeficiency Virus Status, and Gestational Age.
Chibuzor M Babalola, Janet C Siebert, Suhas G Kallapur, Holden T Maecker, Yael Rosenberg-Hasson

J Infect Dis· September 2022

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Dynamic Serial Cytokine Measurements During Intravenous Ca-DTPA Chelation in Gadolinium Deposition Disease and Gadolinium Storage Condition: A Pilot Study.
Holden T Maecker, Janet C Siebert, Yael Rosenberg-Hasson, Lorrin M Koran, Miguel Ramalho

Invest Radiol· January 2022

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Novel Circulating and Tissue Monocytes as Well as Macrophages in Pancreatitis and Recovery.
Murli Manohar, Elaina K Jones, Samuel J S Rubin, Priyanka B Subrahmanyam, Gayathri Swaminathan, Janet C Siebert

Gastroenterology· December 2021

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The Gut Microbiota during a Behavioral Weight Loss Intervention.
Maggie A Stanislawski, Daniel N Frank, Sarah J Borengasser, Danielle M Ostendorf, Diana Ir, Janet C Siebert

Nutrients· September 2021

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Acute Chelation Therapy-Associated Changes in Urine Gadolinium, Self-reported Flare Severity, and Serum Cytokines in Gadolinium Deposition Disease.
Holden T Maecker, Janet C Siebert, Yael Rosenberg-Hasson, Lorrin M Koran, Miguel Ramalho

Invest Radiol· June 2021

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Multiomic Predictors of Short-Term Weight Loss and Clinical Outcomes During a Behavioral-Based Weight Loss Intervention.
Janet C Siebert, Maggie A Stanislawski, Adnin Zaman, Danielle M Ostendorf, Iain R Konigsberg

Obesity (Silver Spring)· May 2021

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CANTARE: finding and visualizing network-based multi-omic predictive models.
Janet C Siebert, Martine Saint-Cyr, Sarah J Borengasser, Brandie D Wagner, Catherine A Lozupone

BMC Bioinformatics· February 2021

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HIV Infection Is Associated with Loss of Anti-Inflammatory Alveolar Macrophages.
Charles Preston Neff, Shaikh M Atif, Eric C Logue, Janet Siebert, Carsten Görg

J Immunol· November 2020

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The Application of Cytokine Expression Assays to Differentiate Active From Previously Treated Syphilis.
Noah Kojima, Janet C Siebert, Holden Maecker, Yael Rosenberg-Hasson, Segundo R Leon

J Infect Dis· July 2020

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VOLARE: visual analysis of disease-associated microbiome-immune system interplay.
Janet C Siebert, Charles Preston Neff, Jennifer M Schneider, Emilie H Regner, Neha Ohri

BMC Bioinformatics· August 2019

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Visualizing microbiome-immune system interplay.
Janet C Siebert, Carsten Görg, Brent Palmer, Catherine Lozupone

Immunotherapy· February 2019

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Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression.
Ying Jin, Genevieve H L Roberts, Tracey M Ferrara, Songtao Ben, Nanja van Geel, Janet Siebert

Nat Commun· January 2019

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Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota.
Emilie H Regner, Neha Ohri, Andrew Stahly, Mark E Gerich, Blair P Fennimore, Janet Siebert

Arthritis Res Ther· July 2018

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Systematic evaluation of immune regulation and modulation.
David F Stroncek, Lisa H Butterfield, Michael A Cannarile, Madhav V Dhodapkar, Tim F Greten, Janet C Siebert

J Immunother Cancer· April 2018

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Simultaneous Recognition of Allogeneic MHC and Cognate Autoantigen by Autoreactive T Cells in Transplant Rejection.
Adam L Burrack, Laurie G Landry, Janet Siebert, Marilyne Coulombe, Ronald G Gill

J Immunol· February 2018

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Immunotherapy biomarkers 2016: overcoming the barriers.
James L Gulley, Jay A Berzofsky, Marcus O Butler, Alessandra Cesano, Bernard A Fox, Janet Siebert

J Immunother Cancer· March 2017

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Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.
Ying Jin, Genevieve Andersen, Daniel Yorgov, Tracey M Ferrara, Songtao Ben, Janet Siebert

Nat Genet· November 2016

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