Publications by authors named "Jared B Parker"

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Mapping Protein Occupancy on DNA with an Unnatural Cytosine Modification in Bio-orthogonal Contexts.
Ruiyao Zhu, Christian E Loo, Christina M Hurley, Jared B Parker, Rahul M Kohli

bioRxiv· November 2025

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The bacterial stress response polymerase DinB tolerates sugar modifications and preferentially incorporates arabinosyl nucleotides.
Christina M Hurley, Jeffrey M Kubiak, Michael B Cory, Jared B Parker, Christian E Loo

RSC Chem Biol· October 2025

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A ternary-code DNA methylome atlas of mouse tissues.
Sol Moe Lee, David C Goldberg, Cameron Cloud, Jared B Parker, Christopher Krapp

Genome Biol· October 2025

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Scalable screening of ternary-code DNA methylation dynamics associated with human traits.
David C Goldberg, Cameron Cloud, Sol Moe Lee, Bret Barnes, Steven Gruber, Jared B Parker

Cell Genom· September 2025

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Scalable Screening of Ternary-Code DNA Methylation Dynamics Associated with Human Traits.
David C Goldberg, Cameron Cloud, Sol Moe Lee, Bret Barnes, Steven Gruber, Jared B Parker

bioRxiv· February 2025

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Expression and purification of cell-penetrating Cas9 and Cas12a enzymes for peptide-assisted genome editing.
Rosella G Cuomo, Zhen Zhang, Keisuke Yamada, Alexander J Krosky, Junwei Shi, Jared B Parker

Methods Enzymol· October 2024

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Efficient engineering of human and mouse primary cells using peptide-assisted genome editing.
Zhen Zhang, Amy E Baxter, Diqiu Ren, Kunhua Qin, Zeyu Chen, Jared B Parker

Nat Biotechnol· February 2024

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Cooperativity between Cas9 and hyperactive AID establishes broad and diversifying mutational footprints in base editors.
Kiara N Berríos, Aleksia Barka, Jasleen Gill, Juan C Serrano, Peter F Bailer, Jared B Parker

Nucleic Acids Res· February 2024

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Action and timing of BacC and BacD in the late stages of biosynthesis of the dipeptide antibiotic bacilysin.
Jared B Parker, Christopher T Walsh

Biochemistry· February 2013

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Stereochemical outcome at four stereogenic centers during conversion of prephenate to tetrahydrotyrosine by BacABGF in the bacilysin pathway.
Jared B Parker, Christopher T Walsh

Biochemistry· July 2012

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Olefin isomerization regiochemistries during tandem action of BacA and BacB on prephenate in bacilysin biosynthesis.
Jared B Parker, Christopher T Walsh

Biochemistry· April 2012

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Dynamics of uracil and 5-fluorouracil in DNA.
Jared B Parker, James T Stivers

Biochemistry· February 2011

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Effect of the thymidylate synthase inhibitors on dUTP and TTP pool levels and the activities of DNA repair glycosylases on uracil and 5-fluorouracil in DNA.
Breeana C Grogan, Jared B Parker, Amy F Guminski, James T Stivers

Biochemistry· February 2011

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Impact of linker strain and flexibility in the design of a fragment-based inhibitor.
Suhman Chung, Jared B Parker, Mario Bianchet, L Mario Amzel, James T Stivers

Nat Chem Biol· June 2009

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Uracil DNA glycosylase: revisiting substrate-assisted catalysis by DNA phosphate anions.
Jared B Parker, James T Stivers

Biochemistry· August 2008

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Enzymatic capture of an extrahelical thymine in the search for uracil in DNA.
Jared B Parker, Mario A Bianchet, Daniel J Krosky, Joshua I Friedman, L Mario Amzel

Nature· September 2007

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