Publications by authors named "Jared Burks"

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Multimodal spatial-omics reveal co-evolution of alveolar progenitors and proinflammatory niches in progression of lung precursor lesions.
Fuduan Peng, Ansam Sinjab, Yibo Dai, Warapen Treekitkarnmongkol, Sujuan Yang, Jared Burks

Cancer Cell· November 2025

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Dual-modality Molecular Cartography: Integrating Multiplex mRNA Detection with Protein Imaging Mass Cytometry.
Sammy Ferri-Borgogno, Danielle L Stolley, Basant T Gamal, Christopher D Pacheco, Ivo Veletic, Jared K Burks

J Vis Exp· November 2025

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Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy.
Erez N Baruch, Frederico O Gleber-Netto, Priyadharsini Nagarajan, Xiayu Rao, Shamima Akhter, Jared K Burks

Nature· October 2025

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RNA In situ Hybridization with Sequential Protein Immunofluorescence in Tandem Assay.
Danielle L Stolley, Anna K Casasent, Basant T Gamal, Akshay Basi, Xuehong Gui, Jared K Burks

J Vis Exp· October 2025

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MicroRNA Amplification and Recognition through Locked-nucleic-acid In situ Hybridization as A Novel Detection and Quantification Method.
Basant T Gamal, Danielle L Stolley, Christopher D Pacheco, Akshay Basi, Anna K Casasent, Jared K Burks

J Vis Exp· October 2025

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Sequential Detection of Biomolecules in Formalin-fixed, Paraffin-embedded Samples with Mass Spectrometry Imaging.
Erin H Seeley, Danielle L Stolley, Anna K Casasent, Basant T Gamal, Sammy Ferri-Borgogno, Jared K Burks

J Vis Exp· October 2025

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Comprehensive Spatial Profiling of Species-agnostic Transcriptomes via Stereo-seq.
Anna K Casasent, Danielle L Stolley, Basant T Gamal, Arnold Dahay, Samuel Mok, Jared K Burks

J Vis Exp· October 2025

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Selective Alanine Transporter Utilization Is a Therapeutic Vulnerability in ARID1A-Mutant Ovarian Cancer.
Hao Nie, Liping Liao, Rafal J Zielinski, Javier A Gomez, Akshay V Basi, Jared K Burks

Cancer Res· September 2025

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Spatial mapping of transcriptomic plasticity in metastatic pancreatic cancer.
Guangsheng Pei, Jimin Min, Kimal I Rajapakshe, Vittorio Branchi, Yunhe Liu, Jared K Burks

Nature· June 2025

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Sickle cell disease induces chromatin introversion and ferroptosis in CD8 T cells to suppress anti-tumor immunity.
Zilong Zhao, Benxia Hu, Yalan Deng, Melinda Soeung, Jun Yao, Jared K Burks

Immunity· June 2025

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Downregulation of LATS1/2 Drives Endothelial Senescence-Associated Stemness (SAS) and Atherothrombotic Lesion Formation.
Sivareddy Kotla, Jonghae Lee, Kyung Ae Ko, Weiqing Chen, Venkata Subrahmanya Kumar Samanthapudi, Jared K Burks

bioRxiv· June 2025

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Conserved spatial subtypes and cellular neighborhoods of cancer-associated fibroblasts revealed by single-cell spatial multi-omics.
Yunhe Liu, Ansam Sinjab, Jimin Min, Guangchun Han, Francesca Paradiso, Jared K Burks

Cancer Cell· May 2025

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Characterizing spatial immune architecture in metastatic melanoma using high-dimensional multiplex imaging.
Joel Eliason, Santhoshi Krishnan, Yasunari Fukuda, Matias A Bustos, Dan Winkowski, Jared K Burks

Front Immunol· May 2025

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Multimodal spatial proteomic profiling in acute myeloid leukemia.
Christopher P Ly, Ivo Veletic, Christopher D Pacheco, Enes Dasdemir, Fatima Z Jelloul, Jared K Burks

NPJ Precis Oncol· May 2025

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Integrated single cell spatial multi-omics landscape of WHO grades 2-4 diffuse gliomas identifies locoregional metabolomic regulators of glioma growth.
Yanxia Ma, Shamini Ayyadhury, Sanjay Singh, Yashu Vashishath, Cagri Ozdemir, Jared K Burks

bioRxiv· May 2025

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Reevaluating Anti-Inflammatory Therapy: Targeting Senescence to Balance Anti-Cancer Efficacy and Vascular Disease.
Bernardo Casso-Chapa, Norma Alicia Vazquez González, Nhat-Tu Le, Nicolas L Palaskas, Kevin T Nead, Jared K Burks

Arterioscler Thromb Vasc Biol· March 2025

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High Dimensional Proteomic Multiplex Imaging of the Central Nervous System Using the COMET System.
Hinda Najem, Sebastian Pacheco, Jillyn Turunen, Shashwat Tripathi, Alicia Steffens, Jared K Burks

bioRxiv· February 2025

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Increased expression of CD70 in relapsed acute myeloid leukemia after hypomethylating agents.
Mario L Marques-Piubelli, Bijender Kumar, Rafet Basar, Siler Panowski, Surabhi Srinivasan, Jared K Burks

Virchows Arch· November 2024

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Role of the Crosstalk B:Neoplastic T Follicular Helper Cells in the Pathobiology of Nodal T Follicular Helper Cell Lymphomas.
Tania P Sainz, Vishal Sahu, Javier A Gomez, Nicholas J Dcunha, Akshay V Basi, Jared K Burks

Lab Invest· November 2024

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Antiangiogenic Tyrosine Kinase Inhibitors have Differential Efficacy in Clear Cell Renal Cell Carcinoma in Bone.
Stefan Maksimovic, Nina C Boscolo, Ludovica La Posta, Sergio Barrios, Mohammad Jad Moussa, Jared K Burks

Cancer Res Commun· October 2024

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Neural landscape is associated with functional outcomes in irradiated patients with oropharyngeal squamous cell carcinoma.
Shajedul Islam, Frederico O Gleber-Netto, Collin F Mulcahy, Mica D E Glaun, Snigdha Srivastava, Jared K Burks

Sci Transl Med· July 2024

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Targeting sinonasal undifferentiated carcinoma with a combinatory immunotherapy approach.
Austin T K Hoke, Yoko Takahashi, Michelle R Padget, Javier Gomez, Moran Amit, Jared Burks

Transl Oncol· June 2024

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Protocol to quantify immune cell distribution from the vasculature to the glioma microenvironment on sequential immunofluorescence multiplex images.
Hinda Najem, Sebastian Pacheco, Joanna Kowal, Dan Winkowski, Jared K Burks

STAR Protoc· June 2024

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Comprehensive characterization of IFNγ signaling in acute myeloid leukemia reveals prognostic and therapeutic strategies.
Bofei Wang, Patrick K Reville, Mhd Yousuf Yassouf, Fatima Z Jelloul, Christopher Ly, Jared K Burks

Nat Commun· February 2024

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Molecular, Metabolic, and Subcellular Mapping of the Tumor Immune Microenvironment via 3D Targeted and Non-Targeted Multiplex Multi-Omics Analyses.
Sammy Ferri-Borgogno, Jared K Burks, Erin H Seeley, Trevor D McKee, Danielle L Stolley

Cancers (Basel)· February 2024

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