Publications by authors named "Jared Simpson"

Claim this Profile
R
Rapid donor-specific single nucleotide variation detection by nanopore sequencing of ex vivo lung perfusate.
Haruchika Yamamoto, Jonathan Allen, Adam Sundby, Philip Zuzarte, Shaf Keshavjee, Jared Simpson

JHLT Open· February 2026

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
W
Write and Read: Harnessing Synthetic DNA Modifications for Nanopore Sequencing.
Uri Bertocchi, Assaf Grunwald, Gal Goldner, Eliran Eitan, Sigal Avraham, Jared T Simpson

ACS Nano· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
W
Write and Read: Harnessing Synthetic DNA Modifications for Nanopore Sequencing.
Uri Bertocchi, Assaf Grunwald, Gal Goldner, Eliran Eitan, Sigal Avraham, Jared T Simpson

bioRxiv· September 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Detecting Protein-DNA binding in single molecules using antibody guided methylation.
Apoorva Thatavarty, Naor Sagy, Michael R Erdos, Isac Lee, Jared T Simpson

Epigenetics Chromatin· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Pathogenesis and transmission of SARS-CoV-2 D614G, Alpha, Gamma, Delta, and Omicron variants in golden hamsters.
Andra Banete, Bryan D Griffin, Juan C Corredor, Emily Chien, Lily Yip, Jared T Simpson

Npj Viruses· February 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes.
Jalees A Nasir, Finlay Maguire, Kendrick M Smith, Emily M Panousis, Sheridan J C Baker, Jared T Simpson

NAR Genom Bioinform· December 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Systematic surveillance of SARS-CoV-2 reveals dynamics of variant mutagenesis and transmission in a large urban population.
Marie-Ming Aynaud, Lauren Caldwell, Khalid N Al-Zahrani, Seda Barutcu, Kin Chan, Jared Simpson

Nat Commun· December 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
An updated reference genome sequence and annotation reveals gene losses and gains underlying naked mole-rat biology.
Dustin J Sokolowski, Mihai Miclăuș, Alexander Nater, Mariela Faykoo-Martinez, Kendra Hoekzema, Jared T Simpson

bioRxiv· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Jared T Simpson

Microb Genom· October 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Inhibiting EZH2 targets atypical teratoid rhabdoid tumor by triggering viral mimicry via both RNA and DNA sensing pathways.
Shengrui Feng, Sajid A Marhon, Dustin J Sokolowski, Alister D'Costa, Fraser Soares, Jared T Simpson

Nat Commun· October 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Jared T Simpson

ArXiv· May 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Detecting Somatic Mutations Without Matched Normal Samples Using Long Reads.
Jared T Simpson

bioRxiv· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Coronavirus disease 2019 (COVID-19) outbreak on an in-patient medical unit associated with unrecognized exposures in common areas-Epidemiological and whole-genome sequencing investigation.
Dylan C Kain, Sandra Isabel, Mariana Abdulnoor, Karel Boissinot, Richard De Borja, Jared T Simpson

Infect Control Hosp Epidemiol· November 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Characterizing Risk Factors for Hospitalization and Clinical Characteristics in a Cohort of COVID-19 Patients Enrolled in the GENCOV Study.
Gregory Morgan, Selina Casalino, Sunakshi Chowdhary, Erika Frangione, Chun Yiu Jordan Fung, Jared Simpson

Viruses· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Prevalence of Low-Frequency, Antiviral Resistance Variants in SARS-CoV-2 Isolates in Ontario, Canada, 2020-2023.
Calvin P Sjaarda, Lynette Lau, Jared T Simpson, Ramzi Fattouh, Mia J Biondi

JAMA Netw Open· July 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A Novel Approach to Detect IDH Point Mutations in Gliomas Using Nanopore Sequencing: Test Validation for the Clinical Laboratory.
Mashiat L Mimosa, Wafa Al-Ameri, Jared T Simpson, Michael Nakhla, Karel Boissinot

J Mol Diagn· March 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genome screening, reporting, and genetic counseling for healthy populations.
Selina Casalino, Erika Frangione, Monica Chung, Georgia MacDonald, Sunakshi Chowdhary, Jared Simpson

Hum Genet· February 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genome Reporting for Healthy Populations-Pipeline for Genomic Screening from the GENCOV COVID-19 Study.
Erika Frangione, Monica Chung, Selina Casalino, Georgia MacDonald, Sunakshi Chowdhary, Jared Simpson

Curr Protoc· October 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada.
Sandra Isabel, Mariana Abdulnoor, Karel Boissinot, Marc R Isabel, Richard de Borja, Jared T Simpson

Sci Rep· August 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada.
Sandra Isabel, Mariana Abdulnoor, Karel Boissinot, Marc R Isabel, Richard de Borja, Jared T Simpson

Sci Rep· June 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Implementation of serological and molecular tools to inform COVID-19 patient management: protocol for the GENCOV prospective cohort study.
Jennifer Taher, Chloe Mighton, Sunakshi Chowdhary, Selina Casalino, Erika Frangione, Jared Simpson

BMJ Open· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Detection of the novel SARS-CoV-2 European lineage B.1.177 in Ontario, Canada.
Jennifer L Guthrie, Sarah Teatero, Sandra Zittermann, Yao Chen, Ashleigh Sullivan, Jared T Simpson

J Clin Virol Plus· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada.
Calvin P Sjaarda, Jennifer L Guthrie, Samira Mubareka, Jared T Simpson, Bettina Hamelin

mSphere· May 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Revealing nascent RNA processing dynamics with nano-COP.
Heather L Drexler, Karine Choquet, Hope E Merens, Paul S Tang, Jared T Simpson

Nat Protoc· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
Matthew H Bailey, William U Meyerson, Lewis Jonathan Dursi, Liang-Bo Wang, Guanlan Dong, Jared T Simpson

Nat Commun· November 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis