Publications by authors named "Jarone Pinhassi"

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The Nextflow nf-core/metatdenovo pipeline for reproducible annotation of metatranscriptomes, and more.
Danilo Di Leo, Emelie Nilsson, Arianna Krinos, Jarone Pinhassi, Daniel Lundin

PeerJ· December 2025

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Decoding the genetic drivers of marine bacterial blooms through comparative genomics.
Xavier Rey-Velasco, Adrià Auladell, Ona Deulofeu-Capo, Daniel Lundin, Jarone Pinhassi

Microbiome· October 2025

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Pronounced seasonal dynamics in transcription of vitamin B1 acquisition strategies diverge among Baltic Sea bacterioplankton.
Clara Pérez-Martínez, Benjamin Pontiller, Sandra Martínez-García, Samuel Hylander, Ryan W Paerl, Jarone Pinhassi

Environ Microbiome· September 2025

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Experimental assessment of interactions between marine bacteria and model protists: from predator-prey relationships to bacterial-mediated lysis.
Diana Axelsson-Olsson, Nikolaj Gubonin, Stina Israelsson, Jarone Pinhassi

Appl Environ Microbiol· June 2025

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Seasonal dynamics and nutrient controls of biogenic silica in Baltic Sea surface microplankton and picoplankton communities.
Yelena Churakova, Anabella Aguilera, Evangelia Charalampous, Daniel J Conley, Daniel Lundin, Jarone Pinhassi

Appl Environ Microbiol· May 2025

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The evaluation of biogenic silica in brackish and freshwater strains reveals links between phylogeny and silica accumulation in picocyanobacteria.
Anabella Aguilera, Daniel Lundin, Evangelia Charalampous, Yelena Churakova, Christian Tellgren-Roth, Jarone Pinhassi

Appl Environ Microbiol· April 2025

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Unveiling interactions mediated by B vitamins between diatoms and their associated bacteria from cocultures.
Cecilia Costas-Selas, Sandra Martínez-García, Jarone Pinhassi, Emilio Fernández, Eva Teira

J Phycol· December 2024

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Prokaryotic morphological features and maintenance activities governed by seasonal productivity conditions.
Ashish Verma, Dennis Amnebrink, Cheng Choo Lee, Sun Nyunt Wai, Linda Sandblad, Jarone Pinhassi

FEMS Microbiol Ecol· October 2024

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Ploidy levels in diverse picocyanobacteria from the Baltic Sea.
Julia Weissenbach, Anabella Aguilera, Laura Bas Conn, Jarone Pinhassi, Catherine Legrand

Environ Microbiol Rep· October 2024

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Ecological filtering drives rapid spatiotemporal dynamics in fish skin microbiomes.
Hanna Berggren, Yeşerin Yıldırım, Oscar Nordahl, Per Larsson, Mark Dopson, Jarone Pinhassi

Mol Ecol· September 2024

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Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria.
Anabella Aguilera, Javier Alegria Zufia, Laura Bas Conn, Leandra Gurlit, Sylwia Śliwińska-Wilczewska, Jarone Pinhassi

Environ Microbiol· September 2023

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Biogenic silica accumulation in picoeukaryotes: Novel players in the marine silica cycle.
Yelena Churakova, Anabella Aguilera, Evangelia Charalampous, Daniel J Conley, Daniel Lundin, Jarone Pinhassi

Environ Microbiol Rep· August 2023

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Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper.
Emil Fridolfsson, Carina Bunse, Elin Lindehoff, Hanna Farnelid, Benjamin Pontiller, Jarone Pinhassi

Sci Rep· July 2023

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Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities.
Laura Seidel, Elias Broman, Emelie Nilsson, Magnus Ståhle, Marcelo Ketzer, Jarone Pinhassi

ISME J· June 2023

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Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community.
Jana C Massing, Ashkaan K Fahimipour, Carina Bunse, Jarone Pinhassi, Thilo Gross

mSystems· June 2023

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Warmer temperatures favor slower-growing bacteria in natural marine communities.
Clare I Abreu, Martina Dal Bello, Carina Bunse, Jarone Pinhassi, Jeff Gore

Sci Adv· May 2023

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Prokaryotic maintenance respiration and growth efficiency field patterns reproduced by temperature and nutrient control at mesocosm scale.
Ashish Verma, Dennis Amnebrink, Jarone Pinhassi, Johan Wikner

Environ Microbiol· March 2023

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A consensus protocol for the recovery of mercury methylation genes from metagenomes.
Eric Capo, Benjamin D Peterson, Minjae Kim, Daniel S Jones, Silvia G Acinas, Jarone Pinhassi

Mol Ecol Resour· January 2023

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Functional responses of key marine bacteria to environmental change - toward genetic counselling for coastal waters.
Jarone Pinhassi, Hanna Farnelid, Sandra Martínez García, Eva Teira, Pierre E Galand

Front Microbiol· December 2022

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Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter.
Christofer M G Osbeck, Daniel Lundin, Camilla Karlsson, Jonna E Teikari, Mary Ann Moran, Jarone Pinhassi

PLoS One· November 2022

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Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system.
Benjamin Pontiller, Sandra Martínez-García, Vanessa Joglar, Dennis Amnebrink, Clara Pérez-Martínez, Jarone Pinhassi

ISME J· October 2022

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Expression Levels of Genes and Mercury Availability Jointly Explain Methylmercury Formation in Stratified Brackish Waters.
Eric Capo, Caiyan Feng, Andrea G Bravo, Stefan Bertilsson, Anne L Soerensen, Jarone Pinhassi

Environ Sci Technol· September 2022

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Seasonal Dynamics in Carbon Cycling of Marine Bacterioplankton Are Lifestyle Dependent.
Sandra Martínez-García, Carina Bunse, Benjamin Pontiller, Federico Baltar, Stina Israelsson, Jarone Pinhassi

Front Microbiol· July 2022

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Seasonal and Spatial Variations in Abundance and Diversity Throughout the Gullmar Fjord, Swedish Skagerrak.
Christien P Laber, Benjamin Pontiller, Carina Bunse, Christofer M G Osbeck, Clara Pérez-Martínez, Jarone Pinhassi

Front Microbiol· May 2022

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Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities.
George Westmeijer, Maliheh Mehrshad, Stephanie Turner, Linda Alakangas, Varvara Sachpazidou, Jarone Pinhassi

Commun Biol· January 2022

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