Publications by authors named "Jarrett D Egertson"

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Elamipretide effects on the skeletal muscle phosphoproteome in aged female mice.
Matthew D Campbell, Miguel Martín-Pérez, Jarrett D Egertson, Matthew J Gaffrey, Lu Wang

Geroscience· December 2022

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Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice.
Matthew D Campbell, Jicheng Duan, Ashton T Samuelson, Matthew J Gaffrey, Gennifer E Merrihew, Jarrett D Egertson

Free Radic Biol Med· April 2019

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Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular Diagnostics.
Yeoun Jin Kim, Steve M M Sweet, Jarrett D Egertson, Andrew J Sedgewick, Sunghee Woo

J Proteome Res· January 2019

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Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry.
Brian C Searle, Lindsay K Pino, Jarrett D Egertson, Ying S Ting, Robert T Lawrence

Nat Commun· December 2018

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Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions.
Brendan X MacLean, Brian S Pratt, Jarrett D Egertson, Michael J MacCoss, Richard D Smith

J Am Soc Mass Spectrom· November 2018

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Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays.
Cyril Galitzine, Jarrett D Egertson, Susan Abbatiello, Clark M Henderson, Lindsay K Pino

Mol Cell Proteomics· May 2018

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Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics.
Ryan Peckner, Samuel A Myers, Alvaro Sebastian Vaca Jacome, Jarrett D Egertson, Jennifer G Abelin

Nat Methods· May 2018

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A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations.
Lev Litichevskiy, Ryan Peckner, Jennifer G Abelin, Jacob K Asiedu, Amanda L Creech, Jarrett D Egertson

Cell Syst· April 2018

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PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data.
Ying S Ting, Jarrett D Egertson, James G Bollinger, Brian C Searle, Samuel H Payne

Nat Methods· September 2017

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Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards.
James G Bollinger, Andrew B Stergachis, Richard S Johnson, Jarrett D Egertson, Michael J MacCoss

Methods Mol Biol· December 2016

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A deeper look into Comet--implementation and features.
Jimmy K Eng, Michael R Hoopmann, Tahmina A Jahan, Jarrett D Egertson, William S Noble

J Am Soc Mass Spectrom· November 2015

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Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments.
Brian C Searle, Jarrett D Egertson, James G Bollinger, Andrew B Stergachis, Michael J MacCoss

Mol Cell Proteomics· September 2015

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Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data.
Ying S Ting, Jarrett D Egertson, Samuel H Payne, Sangtae Kim, Brendan MacLean

Mol Cell Proteomics· September 2015

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Multiplexed peptide analysis using data-independent acquisition and Skyline.
Jarrett D Egertson, Brendan MacLean, Richard Johnson, Yue Xuan, Michael J MacCoss

Nat Protoc· June 2015

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Multiplexed MS/MS for improved data-independent acquisition.
Jarrett D Egertson, Andreas Kuehn, Gennifer E Merrihew, Nicholas W Bateman, Brendan X MacLean

Nat Methods· August 2013

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De novo correction of mass measurement error in low resolution tandem MS spectra for shotgun proteomics.
Jarrett D Egertson, Jimmy K Eng, Michael S Bereman, Edward J Hsieh, Gennifer E Merrihew

J Am Soc Mass Spectrom· December 2012

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Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
Brian J O'Roak, Laura Vives, Wenqing Fu, Jarrett D Egertson, Ian B Stanaway

Science· December 2012

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Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics.
Michael S Bereman, Jesse D Canterbury, Jarrett D Egertson, Julie Horner, Philip M Remes

Anal Chem· February 2012

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Comparison between procedures using SDS for shotgun proteomic analyses of complex samples.
Michael S Bereman, Jarrett D Egertson, Michael J MacCoss

Proteomics· July 2011

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