Publications by authors named "Jason Affourtit"

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Progressive genome-wide introgression in agricultural Campylobacter coli.
Samuel K Sheppard, Xavier Didelot, Keith A Jolley, Aaron E Darling, Ben Pascoe, Jason P Affourtit

Mol Ecol· February 2013

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Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.
Chris M Rands, Aaron Darling, Matthew Fujita, Lesheng Kong, Matthew T Webster, Jason Affourtit

BMC Genomics· February 2013

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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
Kurt H Lamour, Joann Mudge, Daniel Gobena, Oscar P Hurtado-Gonzales, Jeremy Schmutz, Jason P Affourtit

Mol Plant Microbe Interact· October 2012

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The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins.
Anthony R Borneman, Brian A Desany, David Riches, Jason P Affourtit, Angus H Forgan

FEMS Yeast Res· February 2012

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Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.
Jason W Holder, Jil C Ulrich, Anthony C DeBono, Paul A Godfrey, Christopher A Desjardins, Jason P Affourtit

PLoS Genet· September 2011

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Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae.
Anthony R Borneman, Brian A Desany, David Riches, Jason P Affourtit, Angus H Forgan

PLoS Genet· February 2011

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The genome of the domesticated apple (Malus × domestica Borkh.).
Riccardo Velasco, Andrey Zharkikh, Jason Affourtit, Amit Dhingra, Alessandro Cestaro

Nat Genet· October 2010

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Cdcs1 a major colitis susceptibility locus in mice; subcongenic analysis reveals genetic complexity.
Andre Bleich, Gwen Büchler, Jason Beckwith, Lydia M Petell, Jason P Affourtit

Inflamm Bowel Dis· May 2010

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Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins.
Peter J Turnbaugh, Christopher Quince, Jeremiah J Faith, Alice C McHardy, Tanya Yatsunenko, Jason Affourtit

Proc Natl Acad Sci U S A· April 2010

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Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium.
H James Tripp, Shellie R Bench, Kendra A Turk, Rachel A Foster, Brian A Desany, Jason P Affourtit

Nature· March 2010

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Mutation discovery in the mouse using genetically guided array capture and resequencing.
Mark D'Ascenzo, Carl Meacham, Jacob Kitzman, Christina Middle, Jim Knight, Jason Affourtit

Mamm Genome· July 2009

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Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history.
Philip M Kim, Hugo Y K Lam, Alexander E Urban, Jan O Korbel, Jason Affourtit

Genome Res· December 2008

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Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II.
Jonathan P Zehr, Shellie R Bench, Brandon J Carter, Ian Hewson, Faheem Niazi, Jason P Affourtit

Science· November 2008

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Applying gene expression, proteomics and single-nucleotide polymorphism analysis for complex trait gene identification.
Ioannis M Stylianou, Jason P Affourtit, Keith R Shockley, Robert Y Wilpan, Fadi A Abdi

Genetics· March 2008

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Oocyte regulation of metabolic cooperativity between mouse cumulus cells and oocytes: BMP15 and GDF9 control cholesterol biosynthesis in cumulus cells.
You-Qiang Su, Koji Sugiura, Karen Wigglesworth, Marilyn J O'Brien, Jason P Affourtit

Development· January 2008

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Paired-end mapping reveals extensive structural variation in the human genome.
Jan O Korbel, Alexander Eckehart Urban, Jason P Affourtit, Brian Godwin, Fabian Grubert

Science· October 2007

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A mouse model of conditional lipodystrophy.
Suyeon Kim, Li-Wen Huang, Kathy J Snow, Vitaly Ablamunits, Muneer G Hasham, Jason P Affourtit

Proc Natl Acad Sci U S A· October 2007

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Selective degradation of transcripts during meiotic maturation of mouse oocytes.
You-Qiang Su, Koji Sugiura, Yong Woo, Karen Wigglesworth, Sonya Kamdar, Jason Affourtit

Dev Biol· February 2007

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Transcriptional profile of mouse pre-granulosa and Sertoli cells isolated from early-differentiated fetal gonads.
Gerrit J Bouma, Jason P Affourtit, Carol J Bult, Eva M Eicher

Gene Expr Patterns· January 2007

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Inheritance patterns of transcript levels in F1 hybrid mice.
Xiangqin Cui, Jason Affourtit, Keith R Shockley, Yong Woo, Gary A Churchill

Genetics· October 2006

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A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms.
Yong Woo, Jason Affourtit, Sandra Daigle, Agnes Viale, Kevin Johnson

J Biomol Tech· December 2004

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Expression profiling using a hexamer-based universal microarray.
Matthew E Roth, Li Feng, Kevin J McConnell, Paul J Schaffer, Cesar E Guerra, Jason P Affourtit

Nat Biotechnol· April 2004

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