Publications by authors named "Jason E Shoemaker"

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A detailed kinetic model of Eastern equine encephalitis virus replication in a susceptible host cell.
Caroline I Larkin, Matthew D Dunn, Jason E Shoemaker, William B Klimstra, James R Faeder

PLoS Comput Biol· June 2025

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A detailed kinetic model of Eastern equine encephalitis virus replication in a susceptible host cell.
Caroline I Larkin, Matthew D Dunn, Jason E Shoemaker, William B Klimstra, James R Faeder

bioRxiv· December 2024

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Sex-based differences in persistent lung inflammation following influenza infection of juvenile outbred mice.
Brydie R Huckestein, Danielle Antos, Michelle L Manni, Kelly Zeng, Leigh M Miller, Jason E Shoemaker

Am J Physiol Lung Cell Mol Physiol· August 2024

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Mathematical Modeling Suggests That Monocyte Activity May Drive Sex Disparities during Influenza Infection.
Tatum S Liparulo, Jason E Shoemaker

Viruses· May 2024

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Attenuation of A(H7N9) influenza virus infection in mice exposed to cigarette smoke.
Satoshi Fukuyama, Jason E Shoemaker, Dongming Zhao, Noriko Nagajima, Yuriko Tomita

Npj Viruses· March 2024

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Blood Inflammatory Biomarkers Differentiate Inpatient and Outpatient Coronavirus Disease 2019 From Influenza.
Lauren L Luciani, Leigh M Miller, Bo Zhai, Karen Clarke, Kailey Hughes Kramer, Jason E Shoemaker

Open Forum Infect Dis· March 2023

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Mathematical Modeling Finds Disparate Interferon Production Rates Drive Strain-Specific Immunodynamics during Deadly Influenza Infection.
Emily E Ackerman, Jordan J A Weaver, Jason E Shoemaker

Viruses· April 2022

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COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Jason E Shoemaker

Mol Syst Biol· December 2021

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Iterative community-driven development of a SARS-CoV-2 tissue simulator.
Michael Getz, Yafei Wang, Gary An, Maansi Asthana, Andrew Becker, Jason Edward Shoemaker

bioRxiv· November 2021

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Jason E Shoemaker

Mol Syst Biol· October 2021

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Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics.
Josua O Aponte-Serrano, Jordan J A Weaver, T J Sego, James A Glazier, Jason E Shoemaker

PLoS Comput Biol· October 2021

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Agent-based modeling reveals benefits of heterogeneous and stochastic cell populations during cGAS-mediated IFNβ production.
Robert W Gregg, Fathima Shabnam, Jason E Shoemaker

Bioinformatics· June 2021

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DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks.
Heeju Noh, Ziyi Hua, Panagiotis Chrysinas, Jason E Shoemaker, Rudiyanto Gunawan

BMC Bioinformatics· March 2021

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TREAP: A New Topological Approach to Drug Target Inference.
Muying Wang, Lauren L Luciani, Heeju Noh, Ericka Mochan, Jason E Shoemaker

Biophys J· December 2020

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Pathogenesis of Influenza A(H7N9) Virus in Aged Nonhuman Primates.
Satoshi Fukuyama, Kiyoko Iwatsuki-Horimoto, Maki Kiso, Noriko Nakajima, Robert W Gregg, Jason E Shoemaker

J Infect Dis· September 2020

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Network Controllability-Based Prioritization of Candidates for SARS-CoV-2 Drug Repositioning.
Emily E Ackerman, Jason E Shoemaker

Viruses· September 2020

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Repurposing the psoriasis drug Oxarol to an ointment adjuvant for the influenza vaccine.
Ryota Sato, Chieko Makino-Okamura, Quingshun Lin, Muying Wang, Jason E Shoemaker

Int Immunol· July 2020

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A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery.
Emily E Ackerman, John F Alcorn, Takeshi Hase, Jason E Shoemaker

BMC Bioinformatics· June 2019

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Chemical hazard prediction and hypothesis testing using quantitative adverse outcome pathways.
Edward J Perkins, Kalyan Gayen, Jason E Shoemaker, Philipp Antczak, Lyle Burgoon

ALTEX· April 2019

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Mathematical modeling of the cGAS pathway reveals robustness of DNA sensing to TREX1 feedback.
Robert W Gregg, Saumendra N Sarkar, Jason E Shoemaker

J Theor Biol· February 2019

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Network-Guided Discovery of Influenza Virus Replication Host Factors.
Emily E Ackerman, Eiryo Kawakami, Manami Katoh, Tokiko Watanabe, Shinji Watanabe, Jason E Shoemaker

mBio· December 2018

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Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection.
Heeju Noh, Jason E Shoemaker, Rudiyanto Gunawan

Nucleic Acids Res· April 2018

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C646, a Novel p300/CREB-Binding Protein-Specific Inhibitor of Histone Acetyltransferase, Attenuates Influenza A Virus Infection.
Dongming Zhao, Satoshi Fukuyama, Yuko Sakai-Tagawa, Emi Takashita, Jason E Shoemaker

Antimicrob Agents Chemother· December 2015

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Identifying problematic drugs based on the characteristics of their targets.
Tiago J S Lopes, Jason E Shoemaker, Yukiko Matsuoka, Yoshihiro Kawaoka, Hiroaki Kitano

Front Pharmacol· September 2015

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An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation.
Jason E Shoemaker, Satoshi Fukuyama, Amie J Eisfeld, Dongming Zhao, Eiryo Kawakami

PLoS Pathog· June 2015

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