Publications by authors named "Jason Stagno"

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Structural investigation of an RNA device that regulates PD-1 expression in mammalian cells.
Jason R Stagno, Justin C Deme, Vibha Dwivedi, Yun-Tzai Lee, Hyun Kyung Lee

Nucleic Acids Res· February 2025

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The conformational space of RNase P RNA in solution.
Yun-Tzai Lee, Maximilia F S Degenhardt, Ilias Skeparnias, Hermann F Degenhardt, Yuba R Bhandari, Jason R Stagno

Nature· January 2025

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Determining structures of RNA conformers using AFM and deep neural networks.
Maximilia F S Degenhardt, Hermann F Degenhardt, Yuba R Bhandari, Yun-Tzai Lee, Jienyu Ding, Jason R Stagno

Nature· January 2025

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Riboswitch Mechanisms for Regulation of P1 Helix Stability.
Jason R Stagno, Yun-Xing Wang

Int J Mol Sci· October 2024

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Capturing heterogeneous conformers of cobalamin riboswitch by cryo-EM.
Jienyu Ding, Justin C Deme, Jason R Stagno, Ping Yu, Susan M Lea

Nucleic Acids Res· October 2023

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Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state.
Hyun Kyung Lee, Yun-Tzai Lee, Lixin Fan, Haley M Wilt, Chelsie E Conrad, Jason R Stagno

Structure· July 2023

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Determining structures of individual RNA conformers using atomic force microscopy images and deep neural networks.
Maximilia F S Degenhardt, Hermann F Degenhardt, Yuba R Bhandari, Yun-Tzai Lee, Jienyu Ding, Jason R Stagno

Res Sq· June 2023

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Visualizing RNA conformational and architectural heterogeneity in solution.
Jienyu Ding, Yun-Tzai Lee, Yuba Bhandari, Charles D Schwieters, Lixin Fan, Jason R Stagno

Nat Commun· February 2023

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Preparation of RNA Microcrystals for Serial Femtosecond Crystallography Experiments.
Jason R Stagno

Methods Mol Biol· October 2022

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Mix-and-Inject Serial Femtosecond Crystallography to Capture RNA Riboswitch Intermediates.
Jason R Stagno, Juraj Knoska, Henry N Chapman, Yun-Xing Wang

Methods Mol Biol· October 2022

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Developing methods to study conformational changes in RNA crystals using a photocaged ligand.
Hyun Kyung Lee, Chelsie E Conrad, Valentin Magidson, William F Heinz, Gary Pauly, Jason R Stagno

Front Mol Biosci· August 2022

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The mechanism driving a solid-solid phase transition in a biomacromolecular crystal.
Saminathan Ramakrishnan, Jason R Stagno, William F Heinz, Xiaobing Zuo, Ping Yu

IUCrJ· July 2021

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A combined approach to characterize ligand-induced solid-solid phase transitions in biomacromolecular crystals.
Saminathan Ramakrishnan, Jason R Stagno, Valentin Magidson, William F Heinz, Yun-Xing Wang

J Appl Crystallogr· June 2021

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Dependence of phase transition uniformity on crystal sizes characterized using birefringence.
Saminathan Ramakrishnan, Jason R Stagno, Valentin Magidson, William F Heinz, Yun-Xing Wang

Struct Dyn· May 2021

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Tying the knot in the tetrahydrofolate (THF) riboswitch: A molecular basis for gene regulation.
Haley M Wilt, Ping Yu, Kemin Tan, Yun-Xing Wang, Jason R Stagno

J Struct Biol· March 2021

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Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Saminathan Ramakrishnan, Jason R Stagno, Chelsie E Conrad, Jienyu Ding, Ping Yu

Nat Commun· March 2021

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Multiphase Assembly of Small Molecule Microcrystalline Peptide Hydrogel Allows Immunomodulatory Combination Therapy for Long-Term Heart Transplant Survival.
Poulami Majumder, Yichuan Zhang, Marcos Iglesias, Lixin Fan, James A Kelley, Jason R Stagno

Small· September 2020

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FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.
Haley M Wilt, Ping Yu, Kemin Tan, Yun-Xing Wang, Jason R Stagno

J Struct Biol X· August 2020

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Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing.
Jason R Stagno, Ping Yu, Marzena A Dyba, Yun-Xing Wang, Yu Liu

PLoS One· January 2020

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Conformational flexibility of adenine riboswitch aptamer in apo and bound states using NMR and an X-ray free electron laser.
Jienv Ding, Monalisa Swain, Ping Yu, Jason R Stagno, Yun-Xing Wang

J Biomol NMR· September 2019

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Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser.
Robert J Trachman, Jason R Stagno, Chelsie Conrad, Christopher P Jones, Pontus Fischer

Acta Crystallogr F Struct Biol Commun· August 2019

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Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser.
Christopher Jones, Brandon Tran, Chelsie Conrad, Jason Stagno, Robert Trachman

Acta Crystallogr F Struct Biol Commun· July 2019

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Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.
Yu Liu, Erik Holmstrom, Ping Yu, Kemin Tan, Xiaobing Zuo, Jason R Stagno

Nat Protoc· May 2018

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Topological Structure Determination of RNA Using Small-Angle X-Ray Scattering.
Yuba R Bhandari, Lixin Fan, Xianyang Fang, George F Zaki, Eric A Stahlberg, Jason R Stagno

J Mol Biol· November 2017

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Real-time crystallographic studies of the adenine riboswitch using an X-ray free-electron laser.
Jason R Stagno, Yuba R Bhandari, Chelsie E Conrad, Yu Liu, Yun-Xing Wang

FEBS J· October 2017

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