Publications by authors named "Javad Rahimikollu"

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Sliding Window Interaction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.
Jane C Siwek, Alisa A Omelchenko, Prabal Chhibbar, Sanya Arshad, AnnaElaine Rosengart, Javad Rahimikollu

Nat Methods· August 2025

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Multi-modal integration of protein interactomes with genomic and molecular data discovers distinct RA endotypes.
Javad Rahimikollu, Priyamvada Guha Roy, Akash Kishore, Danica Morgan Lee, Lauren A Vanderlinden

medRxiv· August 2025

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Deep humoral profiling coupled to interpretable machine learning unveils diagnostic markers and pathophysiology of schistosomiasis.
Anushka Saha, Trirupa Chakraborty, Javad Rahimikollu, Hanxi Xiao, Lorena B Pereira de Oliveira

Sci Transl Med· September 2024

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SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains.
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib

Nat Methods· May 2024

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Sliding Window INteraction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.
Alisa A Omelchenko, Jane C Siwek, Prabal Chhibbar, Sanya Arshad, Iliyan Nazarali, Javad Rahimikollu

bioRxiv· May 2024

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A supervised take on dimensionality reduction via hybrid subset selection.
Javad Rahimikollu, Jishnu Das

Patterns (N Y)· August 2022

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DataRemix: a universal data transformation for optimal inference from gene expression datasets.
Weiguang Mao, Javad Rahimikollu, Ryan Hausler, Maria Chikina

Bioinformatics· May 2021

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Predictors of time to first cannulation for arteriovenous fistula in pediatric hemodialysis patients: Midwest Pediatric Nephrology Consortium study.
Ali Mirza Onder, Joseph T Flynn, Anthony A Billings, Fang Deng, Marissa DeFreitas, Javad Rahimikollu

Pediatr Nephrol· February 2020

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Correction to: Predictors of patency for arteriovenous fistulae and grafts in pediatric hemodialysis patients.
Ali Mirza Onder, Joseph T Flynn, Anthony A Billings, Fang Deng, Marissa DeFreitas, Javad Rahimikollu

Pediatr Nephrol· August 2019

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Predictors of patency for arteriovenous fistulae and grafts in pediatric hemodialysis patients.
Ali Mirza Onder, Joseph T Flynn, Anthony A Billings, Fang Deng, Marissa DeFreitas, Javad Rahimikollu

Pediatr Nephrol· February 2019

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