Publications by authors named "Jayadev Joshi"

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Large-scale classification of metagenomic samples: a comparative analysis of classical machine learning techniques vs a novel brain-inspired hyperdimensional computing approach.
Jayadev Joshi, Fabio Cumbo, Daniel Blankenberg

bioRxiv· December 2025

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DICED (Database of Identified Cleavage Sites Endemic to Diseases States): A Searchable Web Interface for Terminomics/Degradomics.
Jayadev Joshi, Sumit Bhutada, Daniel R Martin, Joyce Guzowski, Daniel Blankenberg

Proteomics· July 2025

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Editorial: The role of the microbiome in head and neck cancer.
Fabio Cumbo, Jayadev Joshi, Dietmar Thurnher, Anastasios Maniakas

Front Oncol· January 2025

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Genomics to Notebook (g2nb): Extending the Electronic Notebook to Address the Challenges of Bioinformatics Analysis.
Michael Reich, Thorin Tabor, Ted Liefeld, Jayadev Joshi, Forrest Kim

J Bioinform Syst Biol· January 2025

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A Perspective on Protein Structure Prediction Using Quantum Computers.
Hakan Doga, Bryan Raubenolt, Fabio Cumbo, Jayadev Joshi, Frank P DiFilippo

J Chem Theory Comput· May 2024

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mosGILT controls innate immunity and germ cell development in Anopheles gambiae.
Gunjan Arora, Xiaotian Tang, Yingjun Cui, Jing Yang, Yu-Min Chuang, Jayadev Joshi

BMC Genomics· January 2024

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mosGILT regulates innate immune genes and expression.
Gunjan Arora, Xiaotian Tang, Yingjun Cui, Jing Yang, Yu-Min Chuang, Jayadev Joshi

bioRxiv· August 2023

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Phosphorylation-mediated regulation of the Bacillus anthracis phosphoglycerate mutase by the Ser/Thr protein kinase PrkC.
Richa Virmani, Prashant Pradhan, Jayadev Joshi, Avril Luyang Wang, Hem Chandra Joshi

Biochem Biophys Res Commun· July 2023

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Design and Synthesis of Thiazole Scaffold-Based Small Molecules as Anticancer Agents Targeting the Human Lactate Dehydrogenase A Enzyme.
Dolly Sharma, Mamta Singh, Jayadev Joshi, Manoj Garg, Vidhi Chaudhary

ACS Omega· May 2023

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Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis.
Michael Reich, Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim

bioRxiv· April 2023

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Evaluation of vertical and horizontal distribution of particulate matter near an urban roadway using an unmanned aerial vehicle.
Ravish Dubey, Aditya Kumar Patra, Jayadev Joshi, Daniel Blankenberg, Nazneen

Sci Total Environ· August 2022

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PDAUG: a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling.
Jayadev Joshi, Daniel Blankenberg

BMC Bioinformatics· May 2022

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Choline chloride attenuates the allergic airway disease by inhibiting the lysophosphatidylcholine induced response in mouse model.
Preeti Bansal, Naresh Singh, Jayadev Joshi, Naveen Arora, Shailendera N Gaur

Curr Res Pharmacol Drug Discov· May 2022

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Expanding the Galaxy's reference data.
Nagampalli VijayKrishna, Jayadev Joshi, Nate Coraor, Jennifer Hillman-Jackson, Dave Bouvier

Bioinform Adv· April 2022

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Re-Expression of ERα and AR in Receptor Negative Endocrine Cancers GSK3 Inhibition.
Vikas Sharma, Jayadev Joshi, I-Ju Yeh, YongQiu Doughman, Daniel Blankenberg

Front Oncol· March 2022

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Artificial Intelligence in Surveillance, Diagnosis, Drug Discovery and Vaccine Development against COVID-19.
Gunjan Arora, Jayadev Joshi, Rahul Shubhra Mandal, Nitisha Shrivastava, Richa Virmani

Pathogens· August 2021

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The Ser/Thr protein kinase PrkC imprints phenotypic memory in spores by phosphorylating the glycolytic enzyme enolase.
Richa Virmani, Andaleeb Sajid, Anshika Singhal, Mohita Gaur, Jayadev Joshi

J Biol Chem· May 2019

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Pharmacologically induced reversible hypometabolic state mitigates radiation induced lethality in mice.
Subhajit Ghosh, Namita Indracanti, Jayadev Joshi, Jharna Ray, Prem Kumar Indraganti

Sci Rep· November 2017

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Targeting DNA Repair through Podophyllotoxin and Rutin Formulation in Hematopoietic Radioprotection: An Study.
M H Yashavarddhan, Sandeep K Shukla, Pankaj Chaudhary, Nitya N Srivastava, Jayadev Joshi

Front Pharmacol· October 2017

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Rescuing Self: Transient Isolation and Autologous Transplantation of Bone Marrow Mitigates Radiation-Induced Hematopoietic Syndrome and Mortality in Mice.
Subhajit Ghosh, Namita Indracanti, Jayadev Joshi, Prem Kumar Indraganti

Front Immunol· September 2017

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Ligand and Structure Based Models for the Identification of Beta 2 Adrenergic Receptor Antagonists.
Jayadev Joshi, Manali Dimri, Subhajit Ghosh, Nitisha Shrivastava, Rina Chakraborti

Curr Comput Aided Drug Des· September 2016

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Systematic Analysis of Mycobacterial Acylation Reveals First Example of Acylation-mediated Regulation of Enzyme Activity of a Bacterial Phosphatase.
Anshika Singhal, Gunjan Arora, Richa Virmani, Parijat Kundu, Tanya Khanna, Jayadev Joshi

J Biol Chem· October 2015

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Insights into the Origin of Clostridium botulinum Strains: Evolution of Distinct Restriction Endonuclease Sites in rrs (16S rRNA gene).
Ashish Bhushan, Tanmoy Mukherjee, Jayadev Joshi, Pratap Shankar, Vipin Chandra Kalia

Indian J Microbiol· June 2015

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Prilocaine hydrochloride protects zebrafish from lethal effects of ionizing radiation: role of hematopoietic cell expansion.
Manali Dimri, Jayadev Joshi, Nitisha Shrivastava, Subhajit Ghosh, Rina Chakraborti

Tokai J Exp Clin Med· March 2015

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Todralazine protects zebrafish from lethal effects of ionizing radiation: role of hematopoietic cell expansion.
Manali Dimri, Jayadev Joshi, Rina Chakrabarti, Neeta Sehgal, Angara Sureshbabu

Zebrafish· February 2015

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