Publications by authors named "Jean Gao"

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Segment Any Cell: A SAM-Based Auto-Prompting Fine-Tuning Framework for Nuclei Segmentation.
Saiyang Na, Yuzhi Guo, Feng Jiang, Hehuan Ma, Jean Gao

IEEE Trans Neural Netw Learn Syst· December 2025

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Abnormality-aware multimodal learning for WSI classification.
Thao M Dang, Qifeng Zhou, Yuzhi Guo, Hehuan Ma, Saiyang Na, Jean Gao

Front Med (Lausanne)· February 2025

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From correlation to causation using directed topological overlap matrix: Applications in genomics.
Borzou Alipourfard, Jean Gao

Methods· November 2023

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Deep Fusion of Brain Structure-Function in Mild Cognitive Impairment.
Lu Zhang, Li Wang, Jean Gao, Shannon L Risacher, Jingwen Yan

Med Image Anal· August 2021

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Network Representation of Large-Scale Heterogeneous RNA Sequences with Integration of Diverse Multi-omics, Interactions, and Annotations Data.
Nhat Tran, Jean Gao

Pac Symp Biocomput· March 2021

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Integration of Multi-omics Data for Expression Quantitative Trait Loci (eQTL) Analysis and eQTL Epistasis.
Mingon Kang, Jean Gao

Methods Mol Biol· December 2020

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Robust Inductive Matrix Completion Strategy to Explore Associations Between LincRNAs and Human Disease Phenotypes.
Ashis Kumer Biswas, Dong-Chul Kim, Mingon Kang, Jean X Gao

IEEE/ACM Trans Comput Biol Bioinform· July 2020

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MicroRNA dysregulational synergistic network: discovering microRNA dysregulatory modules across subtypes in non-small cell lung cancers.
Nhat Tran, Vinay Abhyankar, KyTai Nguyen, Jon Weidanz, Jean Gao

BMC Bioinformatics· December 2018

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Multi-Block Bipartite Graph for Integrative Genomic Analysis.
Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis K Biswas, Chunyu Liu, Jean Gao

IEEE/ACM Trans Comput Biol Bioinform· May 2018

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Stable solution to l -based robust inductive matrix completion and its application in linking long noncoding RNAs to human diseases.
Ashis Kumer Biswas, Dongchul Kim, Mingon Kang, Chris Ding, Jean X Gao

BMC Med Genomics· December 2017

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Integration of multi-omics data for integrative gene regulatory network inference.
Neda Zarayeneh, Euiseong Ko, Jung Hun Oh, Sang Suh, Chunyu Liu, Jean Gao

Int J Data Min Bioinform· October 2017

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Improved microRNA biomarkers for pathological stages in lung adenocarcinoma via clustering of dysregulated microRNA-target associations.
Nhat Tran, Borzou Alipourfard, Vinay Abhyankar, Kytai Nguyen, Jon Weidanz, Jean Gao

Annu Int Conf IEEE Eng Med Biol Soc· July 2017

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Effects of low dose ionizing radiation on DNA damage-caused pathways by reverse-phase protein array and Bayesian networks.
Dong-Chul Kim, Mingon Kang, Ashis Biswas, Chin-Rang Yang, Xiaoyu Wang, Jean X Gao

J Bioinform Comput Biol· April 2017

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Cascade Classification with Adaptive Feature Extraction for Arrhythmia Detection.
Juyoung Park, Mingon Kang, Jean Gao, Younghoon Kim, Kyungtae Kang

J Med Syst· January 2017

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Big Data Bioinformatics.
Xue-Wen Chen, Jean X Gao

Methods· December 2016

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PR2S2Clust: Patched RNA-seq read segments' structure-oriented clustering.
Ashis Kumer Biswas, Jean X Gao

J Bioinform Comput Biol· October 2016

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Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to psychiatric disorders.
Dongchul Kim, Mingon Kang, Ashis Biswas, Chunyu Liu, Jean Gao

BMC Med Genomics· August 2016

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Multiblock discriminant analysis for integrative genomic study.
Mingon Kang, Dong-Chul Kim, Chunyu Liu, Jean Gao

Biomed Res Int· March 2016

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Computational modeling of phagocyte transmigration for foreign body responses to subcutaneous biomaterial implants in mice.
Mingon Kang, Liping Tang, Jean Gao

BMC Bioinformatics· February 2016

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Probabilistic partial least squares regression for quantitative analysis of Raman spectra.
Shuo Li, James O Nyagilo, Digant P Dave, Wei Wang, Baoju Zhang, Jean Gao

Int J Data Min Bioinform· September 2015

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Editorial on: BioMedical Engineering & Informatics.
Jean X Gao, Lipo Wang

Comput Biol Med· September 2015

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Inference of SNP-gene regulatory networks by integrating gene expressions and genetic perturbations.
Dong-Chul Kim, Jiao Wang, Chunyu Liu, Jean Gao

Biomed Res Int· May 2015

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Data mining in translational bioinformatics.
Xing-Ming Zhao, Jean X Gao, Jose C Nacher

Biomed Res Int· March 2015

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eQTL epistasis: detecting epistatic effects and inferring hierarchical relationships of genes in biological pathways.
Mingon Kang, Chunling Zhang, Hyung-Wook Chun, Chris Ding, Chunyu Liu, Jean Gao

Bioinformatics· March 2015

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Guest editorial: data mining in bioinformatics, biomedicine, and healthcare informatics.
Jean X Gao, Werner Dubitzky

IEEE J Biomed Health Inform· March 2014

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