Publications by authors named "Jeff Gauthier"

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Leveraging artificial intelligence community analytics and nanopore metagenomic surveillance to monitor early enteropathogen outbreaks.
Jeff Gauthier, Sima Mohammadi, Irena Kukavica-Ibrulj, Brian Boyle, Chrystal Landgraff

Front Public Health· December 2025

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Longitudinal gene expression analysis in COVID-19 sepsis highlights dynamic immune, cellular, and metabolic dysfunction in high severity patients.
Andy Y An, Arjun Baghela, Peter Zhang, Travis M Blimkie, Jeff Gauthier

Sci Rep· December 2025

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PDP-Miner: an AI/ML tool to detect prophage tail proteins with depolymerase domains across thousands of bacterial genomes.
Jeff Gauthier, Irena Kukavica-Ibrulj, Roger C Levesque

Bioinformatics· November 2025

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PqsE has a conserved sequence, yet a variable impact in .
Mylène C Trottier, Marie-Christine Groleau, Jeff Gauthier, Antony T Vincent, Roger C Levesque

J Bacteriol· November 2025

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Sources and Transmission Routes of Carbapenem-Resistant : Study Design and Methodology of the SAMPAN Study.
Anneloes van Veen, Selvi N Shahab, Amber Rijfkogel, Anne F Voor In 't Holt, Corné H W Klaassen, Jeff Gauthier

Antibiotics (Basel)· January 2025

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Honeybee gut bacterial strain improved survival and gut microbiota homeostasis in exposed to clothianidin.
Sarah El Khoury, Jeff Gauthier, Pierre Luc Mercier, Stéphane Moïse, Pierre Giovenazzo

Microbiol Spectr· October 2024

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Evolution and host-specific adaptation of .
Aaron Weimann, Adam M Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Jeff Gauthier

Science· July 2024

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Complete genome sequence of multidrug-resistant 0-E.
Jeff Gauthier, Irena Kukavica-Ibrulj, Laure Cockenpot, Vani Mohit, Jimmy Bernier

Microbiol Resour Announc· March 2024

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Characterization of gill bacterial microbiota in wild Arctic char () across lakes, rivers, and bays in the Canadian Arctic ecosystems.
Flora Amill, Jeff Gauthier, Milla Rautio, Nicolas Derome

Microbiol Spectr· March 2024

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Draft genome sequences of six spp. and one sp. isolated from oil sands process-affected water from Alberta, Canada.
Kira L Goff, Jeff Gauthier, Steven M Shideler, Tyson Bookout, Irena Kukavica-Ibrulj

Microbiol Resour Announc· December 2023

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Complete genome sequence of strain OST1911 isolated from oil sand tailing pond water in Alberta, Canada.
Steven M Shideler, Kira Goff, Jeff Gauthier, Roger C Levesque, Shawn Lewenza

Microbiol Resour Announc· December 2023

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Mitochondrial genome sequence of the protist Kent, 1881 (Ancyromonadida) from the Sugluk Inlet, Hudson Strait, Nunavik, Québec.
Romain Gastineau, Sara Harðardóttir, Caroline Guilmette, Claude Lemieux, Monique Turmel, Jeff Gauthier

Front Microbiol· December 2023

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Draft genome sequence of sp. ER28, a cyclohexane pentanoic acid degrader isolated from oil sands process-affected water from Alberta, Canada.
Kira L Goff, Jeff Gauthier, Lisa M Gieg, Irena Kukavica-Ibrulj, Esther Ramos-Padrón

Microbiol Resour Announc· November 2023

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Draft genome sequences of six bacterial strains isolated from Cannabis rhizosphere soil.
Tyson Bookout, Kira L Goff, Jeff Gauthier, Roger C Levesque, Shawn Lewenza

Microbiol Resour Announc· November 2023

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Rapid on-site detection of harmful algal blooms: real-time cyanobacteria identification using Oxford Nanopore sequencing.
Marianne Potvin, Jeff Gauthier, Christophe Langevin, Vani Mohit, Naíla Barbosa da Costa

Front Microbiol· November 2023

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Complete genome sequences of agricultural azole-resistant encoding CYP51A and ERG11 paralogues.
Jeff Gauthier, Sima Mohammadi, Jesse Huffman, Opeyemi U Lawal, Irena Kukavica-Ibrulj

Microbiol Resour Announc· October 2023

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Genetic diversity of Salmonella enterica isolated over 13 years from raw California almonds and from an almond orchard.
Anne-Laure Moyne, Opeyemi U Lawal, Jeff Gauthier, Irena Kukavica-Ibrulj, Marianne Potvin

PLoS One· September 2023

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Post-COVID symptoms are associated with endotypes reflecting poor inflammatory and hemostatic modulation.
Andy Yi An, Arjun Baghela, Peter G Y Zhang, Travis M Blimkie, Jeff Gauthier

Front Immunol· September 2023

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Predicting severity in COVID-19 disease using sepsis blood gene expression signatures.
Arjun Baghela, Andy An, Peter Zhang, Erica Acton, Jeff Gauthier

Sci Rep· January 2023

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An Organ System-Based Synopsis of Virulence.
Charles D Morin, Eric Déziel, Jeff Gauthier, Roger C Levesque, Gee W Lau

Virulence· December 2021

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Genome evolution drives transcriptomic and phenotypic adaptation in during 20 years of infection.
Samuel J T Wardell, Jeff Gauthier, Lois W Martin, Marianne Potvin, Ben Brockway

Microb Genom· November 2021

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Dietary Contamination with a Neonicotinoid (Clothianidin) Gradient Triggers Specific Dysbiosis Signatures of Microbiota Activity along the Honeybee () Digestive Tract.
Sarah El Khoury, Jeff Gauthier, Sidki Bouslama, Bachar Cheaib, Pierre Giovenazzo

Microorganisms· November 2021

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Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods.
Alexander Song, Jeff L Gauthier, Jonathan W Pillow, David W Tank, Adam S Charles

J Neurosci Methods· July 2021

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Evenness-Richness Scatter Plots: a Visual and Insightful Representation of Shannon Entropy Measurements for Ecological Community Analysis.
Jeff Gauthier, Nicolas Derome

mSphere· April 2021

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Complete Genome Sequence of a Species Isolated from Tailings Pond Water in Alberta, Canada.
Steven Shideler, John Headley, Jeff Gauthier, Irena Kukavica-Ibrulj, Roger C Levesque

Microbiol Resour Announc· March 2021

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