Publications by authors named "Jeff Mold"

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Multi-cellular phenotypic dynamics during the progression of an immunocompetent breast cancer model.
Louise Gsell, Spencer S Watson, Iva Sutevski, Matteo Massara, Klara Soukup, Jeff E Mold

iScience· November 2025

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Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data.
Tianyi Li, Qiao Yang, Balazs Acs, Emmanouil G Sifakis, Hosein Toosi, Jeff E Mold

NPJ Precis Oncol· September 2025

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Author Correction: Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope.
Shadi Shafighi, Agnieszka Geras, Barbara Jurzysta, Alireza Sahaf Naeini, Igor Filipiuk, Jeff E Mold

Nat Commun· March 2025

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Distinct Tissue-Dependent Composition and Gene Expression of Human Fetal Innate Lymphoid Cells.
Inga E Rødahl, Martin A Ivarsson, Liyen Loh, Jeff E Mold, Magnus Westgren

Eur J Immunol· February 2025

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Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope.
Shadi Shafighi, Agnieszka Geras, Barbara Jurzysta, Alireza Sahaf Naeini, Igor Filipiuk, Jeff E Mold

Nat Commun· October 2024

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CopyVAE: a variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics.
Semih Kurt, Mandi Chen, Hosein Toosi, Xinsong Chen, Camilla Engblom, Jeff Mold

Bioinformatics· May 2024

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Intestinal damage is required for the pro-inflammatory differentiation of commensal CBir1-specific T cells.
Chiara Sorini, Rebeca F Cardoso, Kumar P Tripathi, Jeff E Mold, Oscar E Diaz

Mucosal Immunol· February 2024

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Clonally heritable gene expression imparts a layer of diversity within cell types.
Jeff E Mold, Martin H Weissman, Michael Ratz, Michael Hagemann-Jensen, Joanna Hård

Cell Syst· February 2024

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Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.
Camilla Engblom, Kim Thrane, Qirong Lin, Alma Andersson, Hosein Toosi, Jeff E Mold

Science· December 2023

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Long-read whole-genome analysis of human single cells.
Joanna Hård, Jeff E Mold, Jesper Eisfeldt, Christian Tellgren-Roth, Susana Häggqvist

Nat Commun· August 2023

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Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.
Seong-Hwan Jun, Hosein Toosi, Jeff Mold, Camilla Engblom, Xinsong Chen

Nat Commun· February 2023

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Prostate cancer disease recurrence after radical prostatectomy is associated with HLA type and local cytomegalovirus immunity.
Johanna Classon, Margherita Zamboni, Camilla Engblom, Kanar Alkass, Giulia Mantovani, Jeff Mold

Mol Oncol· October 2022

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A biliary immune landscape map of primary sclerosing cholangitis reveals a dominant network of neutrophils and tissue-resident T cells.
Christine L Zimmer, Erik von Seth, Marcus Buggert, Otto Strauss, Laura Hertwig, Jeff E Mold

Sci Transl Med· June 2021

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Divergent clonal differentiation trajectories establish CD8 memory T cell heterogeneity during acute viral infections in humans.
Jeff E Mold, Laurent Modolo, Joanna Hård, Margherita Zamboni, Anton J M Larsson

Cell Rep· May 2021

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Expansions of adaptive-like NK cells with a tissue-resident phenotype in human lung and blood.
Demi Brownlie, Marlena Scharenberg, Jeff E Mold, Joanna Hård, Eliisa Kekäläinen

Proc Natl Acad Sci U S A· March 2021

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A heterozygous germline CD100 mutation in a family with primary sclerosing cholangitis.
Xiaojun Jiang, Annika Bergquist, Britt-Sabina Löscher, Geetha Venkatesh, Jeff E Mold

Sci Transl Med· February 2021

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Activation of a neural stem cell transcriptional program in parenchymal astrocytes.
Jens P Magnusson, Margherita Zamboni, Giuseppe Santopolo, Jeff E Mold, Mauricio Barrientos-Somarribas

Elife· August 2020

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Probabilistic count matrix factorization for single cell expression data analysis.
Ghislain Durif, Laurent Modolo, Jeff E Mold, Sophie Lambert-Lacroix, Franck Picard

Bioinformatics· October 2019

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Cell generation dynamics underlying naive T-cell homeostasis in adult humans.
Jeff E Mold, Pedro Réu, Axel Olin, Samuel Bernard, Jakob Michaëlsson

PLoS Biol· October 2019

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Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells.
Christopher Andrew Tibbitt, Julian Mario Stark, Liesbet Martens, Junjie Ma, Jeff Eron Mold

Immunity· July 2019

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Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing.
Joanna Hård, Ezeddin Al Hakim, Marie Kindblom, Åsa K Björklund, Bengt Sennblad, Jeff E Mold

Genome Biol· April 2019

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High dimensional classification with combined adaptive sparse PLS and logistic regression.
Ghislain Durif, Laurent Modolo, Jakob Michaelsson, Jeff E Mold, Sophie Lambert-Lacroix

Bioinformatics· February 2018

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Comparison of whole genome amplification techniques for human single cell exome sequencing.
Erik Borgström, Marta Paterlini, Jeff E Mold, Jonas Frisen, Joakim Lundeberg

PLoS One· August 2017

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The Lifespan and Turnover of Microglia in the Human Brain.
Pedro Réu, Azadeh Khosravi, Samuel Bernard, Jeff E Mold, Mehran Salehpour

Cell Rep· July 2017

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Antibody-secreting plasma cells persist for decades in human intestine.
Ole J B Landsverk, Omri Snir, Raquel Bartolomé Casado, Lisa Richter, Jeff E Mold

J Exp Med· February 2017

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