Publications by authors named "Jeffrey D Varner"

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Constructing Cell-Free Expression Systems for Low-Cost Access.
Fernando Guzman-Chavez, Anibal Arce, Abhinav Adhikari, Sandra Vadhin, Jose Antonio Pedroza-Garcia, Chiara Gandini, Jim W Ajioka, Jenny Molloy, Sobeida Sanchez-Nieto, Jeffrey D Varner

ACS Synth Biol· March 2022

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Endothelial cells metabolically regulate breast cancer invasion toward a microvessel.
Matthew L Tan, Niaa Jenkins-Johnston, Sarah Huang, Brittany Schutrum, Sandra Vadhin, Jeffrey D Varner

APL Bioeng· December 2023

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Convergent Approaches to Delineate the Metabolic Regulation of Tumor Invasion by Hyaluronic Acid Biosynthesis.
Adrian A Shimpi, Matthew L Tan, Michael Vilkhovoy, David Dai, LaDeidra Monet Roberts, Jeffrey D Varner

Adv Healthc Mater· June 2023

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Integrated Constraint-Based Modeling of Cell-Free Protein Synthesis.
Michael Vilkhovoy, Sruti Dammalapati, Sandra Vadhin, Abhinav Adhikari, Jeffrey D Varner

bioRxiv· February 2023

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Effective Biophysical Modeling of Cell Free Transcription and Translation Processes.
Abhinav Adhikari, Michael Vilkhovoy, Sandra Vadhin, Ha Eun Lim, Jeffrey D Varner

Front Bioeng Biotechnol· November 2020

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Engineering orthogonal human O-linked glycoprotein biosynthesis in bacteria.
Aravind Natarajan, Thapakorn Jaroentomeechai, Marielisa Cabrera-Sánchez, Jody C Mohammed, Emily C Cox, Jeffrey D Varner

Nat Chem Biol· October 2020

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Toward a genome scale sequence specific dynamic model of cell-free protein synthesis in .
Nicholas Horvath, Michael Vilkhovoy, Joseph A Wayman, Kara Calhoun, James Swartz, Jeffrey D Varner

Metab Eng Commun· June 2020

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Improving designer glycan production in through model-guided metabolic engineering.
Joseph A Wayman, Cameron Glasscock, Thomas J Mansell, Matthew P DeLisa, Jeffrey D Varner

Metab Eng Commun· December 2019

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Absolute Quantification of Cell-Free Protein Synthesis Metabolism by Reversed-Phase Liquid Chromatography-Mass Spectrometry.
Michael Vilkhovoy, David Dai, Sandra Vadhin, Abhinav Adhikari, Jeffrey D Varner

J Vis Exp· October 2019

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Retinoic acid and 6-formylindolo(3,2-b)carbazole (FICZ) combination therapy reveals putative targets for enhancing response in non-APL AML.
Rodica P Bunaciu, Robert J MacDonald, Holly A Jensen, Feng Gao, Xin Wang, Jeffrey D Varner

Leuk Lymphoma· July 2019

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Analysis of the role of thrombomodulin in all-trans retinoic acid treatment of coagulation disorders in cancer patients.
Hamed Ghaffari, Jeffrey D Varner, Linda R Petzold

Theor Biol Med Model· February 2019

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Src family kinase inhibitor bosutinib enhances retinoic acid-induced differentiation of HL-60 leukemia cells.
Robert J MacDonald, Rodica P Bunaciu, Victoria Ip, David Dai, David Tran, Jeffrey D Varner

Leuk Lymphoma· December 2018

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Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors.
Mengrou Shan, David Dai, Arunodai Vudem, Jeffrey D Varner, Abraham D Stroock

PLoS Comput Biol· December 2018

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Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis.
Michael Vilkhovoy, Nicholas Horvath, Che-Hsiao Shih, Joseph A Wayman, Kara Calhoun, Jeffrey D Varner

ACS Synth Biol· August 2018

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Potential for subsets of wt-NPM1 primary AML blasts to respond to retinoic acid treatment.
Rodica P Bunaciu, Robert J MacDonald, Feng Gao, Lynn M Johnson, Jeffrey D Varner

Oncotarget· January 2018

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Reduced order modeling and analysis of the human complement system.
Adithya Sagar, Wei Dai, Mason Minot, Rachel LeCover, Jeffrey D Varner

PLoS One· December 2017

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An Effective Model of the Retinoic Acid Induced HL-60 Differentiation Program.
Ryan Tasseff, Holly A Jensen, Johanna Congleton, David Dai, Katharine V Rogers, Jeffrey D Varner

Sci Rep· October 2017

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Differential Contributions of Intrinsic and Extrinsic Pathways to Thrombin Generation in Adult, Maternal and Cord Plasma Samples.
Nicklaus T Rice, Fania Szlam, Jeffrey D Varner, Peter S Bernstein, Arthur D Szlam

PLoS One· July 2017

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JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language.
David M Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T Butcher, Jeffrey D Varner

BMC Syst Biol· January 2017

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Population Heterogeneity in the Epithelial to Mesenchymal Transition Is Controlled by NFAT and Phosphorylated Sp1.
Russell Gould, David M Bassen, Anirikh Chakrabarti, Jeffrey D Varner, Jonathan Butcher

PLoS Comput Biol· December 2016

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6-Formylindolo(3,2-b)Carbazole (FICZ) Modulates the Signalsome Responsible for RA-Induced Differentiation of HL-60 Myeloblastic Leukemia Cells.
Rodica P Bunaciu, Holly A Jensen, Robert J MacDonald, Dorian H LaTocha, Jeffrey D Varner

PLoS One· May 2016

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Induced myelomonocytic differentiation in leukemia cells is accompanied by noncanonical transcription factor expression.
Holly A Jensen, Harmony B Yourish, Rodica P Bunaciu, Jeffrey D Varner, Andrew Yen

FEBS Open Bio· November 2015

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Retinoic acid therapy resistance progresses from unilineage to bilineage in HL-60 leukemic blasts.
Holly A Jensen, Rodica P Bunaciu, Christopher N Ibabao, Rebecca Myers, Jeffrey D Varner

PLoS One· October 2015

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GW5074 and PP2 kinase inhibitors implicate nontraditional c-Raf and Lyn function as drivers of retinoic acid-induced maturation.
Holly A Jensen, Rodica P Bunaciu, Jeffrey D Varner, Andrew Yen

Cell Signal· August 2015

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Generating Effective Models and Parameters for RNA Genetic Circuits.
Chelsea Y Hu, Jeffrey D Varner, Julius B Lucks

ACS Synth Biol· August 2015

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