Publications by authors named "Jeffrey M Kidd"

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Distance from sub-Saharan Africa predicts mutational load in diverse human genomes.
Brenna M Henn, Laura R Botigué, Stephan Peischl, Isabelle Dupanloup, Mikhail Lipatov, Brian K Maples, Alicia R Martin, Shaila Musharoff, Howard Cann, Michael P Snyder

January 2016

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Fine-scale recombination rates inferred using the canFam4 assembly are strongly correlated with previous maps of dog recombination.
Jeffrey M Kidd

Mamm Genome· December 2025

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A phylogenetic estimate of canine retrotransposition rates based on genome assembly comparisons.
Matthew S Blacksmith, Anthony K Nguyen, John V Moran, Jeffrey M Kidd

bioRxiv· November 2025

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RNA splicing patterns contribute to burst size variation among HIV-1-infected Jurkat cell clones.
Kamya Gopal, Cleo Burnett, Siarhei Kharytonchyk, Ann Emery, Edmond Atindaana, Jeffrey M Kidd

J Virol· November 2025

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Integrative Genotyping and Analysis of Canine Structural Variation Using Long-read and Short-read Data.
Peter Z Schall, Jeffrey M Kidd

Genome Biol Evol· September 2025

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A map of canine sequence variation relative to a Greenland wolf outgroup.
Anthony K Nguyen, Peter Z Schall, Jeffrey M Kidd

Mamm Genome· December 2024

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Characterization of Nuclear Mitochondrial Insertions in Canine Genome Assemblies.
Peter Z Schall, Jennifer R S Meadows, Fabian Ramos-Almodovar, Jeffrey M Kidd

Genes (Basel)· October 2024

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A Variant-Centric Analysis of Allele Sharing in Dogs and Wolves.
Matthew W Funk, Jeffrey M Kidd

Genes (Basel)· September 2024

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Mobile element insertions affect human pigmentation and skin cancer risk.
Jeffrey M Kidd

Nat Genet· August 2024

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Variable patterns of retrotransposition in different HeLa strains provide mechanistic insights into SINE RNA mobilization processes.
John B Moldovan, Huira C Kopera, Ying Liu, Marta Garcia-Canadas, Purificacion Catalina, Jeffrey M Kidd

Nucleic Acids Res· July 2024

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Duplications and Retrogenes Are Numerous and Widespread in Modern Canine Genomic Assemblies.
Anthony K Nguyen, Matthew S Blacksmith, Jeffrey M Kidd

Genome Biol Evol· July 2024

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Variable patterns of retrotransposition in different HeLa strains provide mechanistic insights into SINE RNA mobilization processes.
John B Moldovan, Huira C Kopera, Ying Liu, Marta Garcia-Canadas, Purificacion Catalina, Jeffrey M Kidd

bioRxiv· May 2024

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Mapping recurrent mosaic copy number variation in human neurons.
Chen Sun, Kunal Kathuria, Sarah B Emery, ByungJun Kim, Ian E Burbulis, Jeffrey M Kidd

Nat Commun· May 2024

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Genome-wide methylation patterns from canine nanopore assemblies.
Peter Z Schall, Paige A Winkler, Simon M Petersen-Jones, Vilma Yuzbasiyan-Gurkan, Jeffrey M Kidd

G3 (Bethesda)· November 2023

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Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases.
McKinzie A Garrison, Yeongjun Jang, Taejeong Bae, Adriana Cherskov, Sarah B Emery, Jeffrey M Kidd

Sci Data· November 2023

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Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture.
Jennifer R S Meadows, Jeffrey M Kidd, Guo-Dong Wang, Heidi G Parker, Peter Z Schall

Genome Biol· August 2023

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Mapping the Complex Genetic Landscape of Human Neurons.
Chen Sun, Kunal Kathuria, Sarah B Emery, ByungJun Kim, Ian E Burbulis, Jeffrey M Kidd

bioRxiv· March 2023

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Recent, full-length gene retrocopies are common in canids.
Kevin Batcher, Scarlett Varney, Daniel York, Matthew Blacksmith, Jeffrey M Kidd

Genome Res· August 2022

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Author Correction: Comparative and demographic analysis of orang-utan genomes.
Devin P Locke, LaDeana W Hillier, Wesley C Warren, Kim C Worley, Lynne V Nazareth, Jeffrey M Kidd

Nature· August 2022

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Canis familiaris (Great Dane domestic dog).
Julia V Halo, Jeffrey M Kidd

Trends Genet· May 2022

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Bimodal Expression Patterns, and Not Viral Burst Sizes, Predict the Effects of Vpr on HIV-1 Proviral Populations in Jurkat Cells.
Edmond Atindaana, Abena Kissi-Twum, Sarah Emery, Cleo Burnett, Jake Pitcher, Jeffrey M Kidd

mBio· April 2022

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Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome.
Vidhya Jagannathan, Christophe Hitte, Jeffrey M Kidd, Patrick Masterson, Terence D Murphy

Genes (Basel)· May 2021

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Comprehensive identification of somatic nucleotide variants in human brain tissue.
Yifan Wang, Taejeong Bae, Jeremy Thorpe, Maxwell A Sherman, Attila G Jones, Jeffrey M Kidd

Genome Biol· March 2021

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Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes.
Julia V Halo, Amanda L Pendleton, Feichen Shen, Aurélien J Doucet, Thomas Derrien, Jeffrey M Kidd

Proc Natl Acad Sci U S A· March 2021

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Genomic Copy Number Variation Study of Nine Macaca Species Provides New Insights into Their Genetic Divergence, Adaptation, and Biomedical Application.
Jing Li, Zhenxin Fan, Feichen Shen, Amanda L Pendleton, Yang Song, Jeffrey M Kidd

Genome Biol Evol· December 2020

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TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data.
Clément Goubert, Jainy Thomas, Lindsay M Payer, Jeffrey M Kidd, Julie Feusier

Nucleic Acids Res· April 2020

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