Publications by authors named "Jeremie Denonfoux"

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Chlorinated ethene biodegradation and associated bacterial taxa in multi-polluted groundwater: Insights from biomolecular markers and stable isotope analysis.
Jennifer Hellal, Catherine Joulian, Charlotte Urien, Stéphanie Ferreira, Jérémie Denonfoux

Sci Total Environ· April 2021

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Functional Genes and Bacterial Communities During Organohalide Respiration of Chloroethenes in Microcosms of Multi-Contaminated Groundwater.
Louis Hermon, Jennifer Hellal, Jérémie Denonfoux, Stéphane Vuilleumier, Gwenaël Imfeld

Front Microbiol· February 2019

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Highlighting the microbial diversity of 12 French cheese varieties.
Eric Dugat-Bony, Lucille Garnier, Jeremie Denonfoux, Stéphanie Ferreira, Anne-Sophie Sarthou

Int J Food Microbiol· December 2016

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Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning.
Céline Ribière, Réjane Beugnot, Nicolas Parisot, Cyrielle Gasc, Clémence Defois, Jérémie Denonfoux

Methods Mol Biol· October 2016

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Probe Design Strategies for Oligonucleotide Microarrays.
Nicolas Parisot, Eric Peyretaillade, Eric Dugat-Bony, Jérémie Denonfoux, Antoine Mahul

Methods Mol Biol· September 2016

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Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes.
Corinne Biderre-Petit, Eric Dugat-Bony, Mickaël Mege, Nicolas Parisot, Lorenz Adrian, Jérémie Denonfoux

PLoS One· July 2016

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Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils.
Aurélie Cébron, Thierry Beguiristain, Jeanne Bongoua-Devisme, Jérémie Denonfoux, Pierre Faure

Environ Sci Pollut Res Int· September 2015

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Large scale explorative oligonucleotide probe selection for thousands of genetic groups on a computing grid: application to phylogenetic probe design using a curated small subunit ribosomal RNA gene database.
Faouzi Jaziri, Eric Peyretaillade, Mohieddine Missaoui, Nicolas Parisot, Sébastien Cipière, Jérémie Denonfoux

ScientificWorldJournal· December 2014

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PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification.
Faouzi Jaziri, Nicolas Parisot, Anis Abid, Jérémie Denonfoux, Céline Ribière

Database (Oxford)· October 2014

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The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level.
William Tottey, Jeremie Denonfoux, Faouzi Jaziri, Nicolas Parisot, Mohiedine Missaoui

PLoS One· December 2013

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Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration.
Jérémie Denonfoux, Nicolas Parisot, Eric Dugat-Bony, Corinne Biderre-Petit, Delphine Boucher

DNA Res· April 2013

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Annotation of microsporidian genomes using transcriptional signals.
Eric Peyretaillade, Nicolas Parisot, Valérie Polonais, Sébastien Terrat, Jérémie Denonfoux

Nat Commun· March 2013

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KASpOD--a web service for highly specific and explorative oligonucleotide design.
Nicolas Parisot, Jérémie Denonfoux, Eric Dugat-Bony, Pierre Peyret, Eric Peyretaillade

Bioinformatics· December 2012

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In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes.
Eric Dugat-Bony, Corinne Biderre-Petit, Faouzi Jaziri, Maude M David, Jérémie Denonfoux

Microb Biotechnol· September 2012

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