Publications by authors named "Jeremy D Glasner"

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Tailoring a Global Iron Regulon to a Uropathogen.
Rajdeep Banerjee, Erin Weisenhorn, Kevin J Schwartz, Kevin S Myers, Jeremy D Glasner

mBio· March 2020

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Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato.
Xing Ma, Nicole T Perna, Jeremy D Glasner, Jianjun Hao, Steven Johnson

Microbiol Resour Announc· February 2019

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Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909).
Lavanya Babujee, Venkatesh Balakrishnan, Patricia J Kiley, Jeremy D Glasner, Nicole T Perna

PLoS One· August 2014

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Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning.
Bing Ma, Amy O Charkowski, Jeremy D Glasner, Nicole T Perna

BMC Genomics· June 2014

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Using comparative genomics for inquiry-based learning to dissect virulence of Escherichia coli O157:H7 and Yersinia pestis.
David J Baumler, Lois M Banta, Kai F Hung, Jodi A Schwarz, Eric L Cabot, Jeremy D Glasner

CBE Life Sci Educ· June 2012

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Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria.
Lavanya Babujee, Jennifer Apodaca, Venkatesh Balakrishnan, Paul Liss, Patricia J Kiley, Jeremy D Glasner

BMC Genomics· March 2012

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The evolution of metabolic networks of E. coli.
David J Baumler, Roman G Peplinski, Jennifer L Reed, Jeremy D Glasner, Nicole T Perna

BMC Syst Biol· November 2011

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Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
Jeremy D Glasner, Ching-Hong Yang, Sylvie Reverchon, Nicole Hugouvieux-Cotte-Pattat, Guy Condemine

J Bacteriol· April 2011

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Unifying themes in microbial associations with animal and plant hosts described using the gene ontology.
Trudy Torto-Alalibo, Candace W Collmer, Michelle Gwinn-Giglio, Magdalen Lindeberg, Shaowu Meng, Jeremy D Glasner

Microbiol Mol Biol Rev· December 2010

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chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.
Yann S Dufour, Gary E Wesenberg, Andrew J Tritt, Jeremy D Glasner, Nicole T Perna

Nucleic Acids Res· July 2010

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Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts.
Pablo Rodríguez-Palenzuela, Isabel M Matas, Jesús Murillo, Emilia López-Solanilla, Leire Bardaji, Jeremy D Glasner

Environ Microbiol· June 2010

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Reordering contigs of draft genomes using the Mauve aligner.
Anna I Rissman, Bob Mau, Bryan S Biehl, Aaron E Darling, Jeremy D Glasner

Bioinformatics· August 2009

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Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
Sam Zaremba, Mila Ramos-Santacruz, Thomas Hampton, Panna Shetty, Joel Fedorko, Jeremy D Glasner

BMC Bioinformatics· June 2009

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Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains.
Magdalen Lindeberg, Bryan S Biehl, Jeremy D Glasner, Nicole T Perna, Alan Collmer

BMC Microbiol· February 2009

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Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.
Jeremy D Glasner, Guy Plunkett, Bradley D Anderson, David J Baumler, Bryan S Biehl

Nucleic Acids Res· January 2008

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Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya.
Bing Ma, Michael E Hibbing, Hye-Sook Kim, Ralph M Reedy, Iris Yedidia, Jeremy D Glasner

Phytopathology· September 2007

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Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation.
Michael G Benton, Swetha Somasundaram, Jeremy D Glasner, Sean P Palecek

BMC Genomics· December 2006

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Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli.
Bob Mau, Jeremy D Glasner, Aaron E Darling, Nicole T Perna

Genome Biol· August 2006

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CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data.
Bradley D Anderson, Michael C Gilson, Abigail A Scott, Bryan S Biehl, Jeremy D Glasner

BMC Genomics· April 2006

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ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.
Jeremy D Glasner, Michael Rusch, Paul Liss, Guy Plunkett, Eric L Cabot

Nucleic Acids Res· January 2006

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Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.
Monica Riley, Takashi Abe, Martha B Arnaud, Mary K B Berlyn, Frederick R Blattner, Jeremy D Glasner

Nucleic Acids Res· January 2006

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Genomic mining for Aspergillus natural products.
Jin Woo Bok, Dirk Hoffmeister, Lori A Maggio-Hall, Renato Murillo, Jeremy D Glasner

Chem Biol· January 2006

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Regulation of iron transport in Streptococcus pneumoniae by RitR, an orphan response regulator.
Andrew T Ulijasz, David R Andes, Jeremy D Glasner, Bernard Weisblum

J Bacteriol· December 2004

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Systematic mutagenesis of the Escherichia coli genome.
Yisheng Kang, Tim Durfee, Jeremy D Glasner, Yu Qiu, David Frisch

J Bacteriol· August 2004

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Comparative whole-genome hybridization reveals genomic islands in Brucella species.
Gireesh Rajashekara, Jeremy D Glasner, David A Glover, Gary A Splitter

J Bacteriol· August 2004

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