Publications by authors named "Jeremy P Gygi"

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A multiomics recovery factor predicts long COVID in the IMPACC study.
Gisela Gabernet, Jessica Maciuch, Jeremy P Gygi, John F Moore, Annmarie Hoch

J Clin Invest· November 2025

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Putting computational models of immunity to the test-An invited challenge to predict B.pertussis vaccination responses.
Pramod Shinde, Lisa Willemsen, Michael Anderson, Minori Aoki, Saonli Basu, Jeremy P Gygi

PLoS Comput Biol· March 2025

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Identification of a multi-omics factor predictive of long COVID in the IMPACC study.
Gisela Gabernet, Jessica Maciuch, Jeremy P Gygi, John F Moore, Annmarie Hoch

bioRxiv· February 2025

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Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors.
Naresh Doni Jayavelu, Hady Samaha, Sonia Tandon Wimalasena, Annmarie Hoch, Jeremy P Gygi

medRxiv· February 2025

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Unraveling SARS-CoV-2 Host-Response Heterogeneity through Longitudinal Molecular Subtyping.
Kexin Wang, Yutong Nie, Cole Maguire, Caitlin Syphurs, Heejune Sheen, Jeremy P Gygi

bioRxiv· November 2024

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Putting computational models of immunity to the test - an invited challenge to predict vaccination outcomes.
Pramod Shinde, Lisa Willemsen, Michael Anderson, Minori Aoki, Saonli Basu, Jeremy P Gygi

bioRxiv· September 2024

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A supervised Bayesian factor model for the identification of multi-omics signatures.
Jeremy P Gygi, Anna Konstorum, Shrikant Pawar, Edel Aron, Steven H Kleinstein

Bioinformatics· May 2024

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Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality.
Jeremy P Gygi, Cole Maguire, Ravi K Patel, Pramod Shinde, Anna Konstorum

J Clin Invest· May 2024

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A multi-omics systems vaccinology resource to develop and test computational models of immunity.
Pramod Shinde, Ferran Soldevila, Joaquin Reyna, Minori Aoki, Mikkel Rasmussen, Jeremy P Gygi

Cell Rep Methods· March 2024

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Integrated longitudinal multi-omics study identifies immune programs associated with COVID-19 severity and mortality in 1152 hospitalized participants.
Jeremy P Gygi, Cole Maguire, Ravi K Patel, Pramod Shinde, Anna Konstorum

bioRxiv· November 2023

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A supervised Bayesian factor model for the identification of multi-omics signatures.
Jeremy P Gygi, Anna Konstorum, Shrikant Pawar, Edel Aron, Steven H Kleinstein

bioRxiv· September 2023

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A systems vaccinology resource to develop and test computational models of immunity.
Pramod Shinde, Ferran Soldevila, Joaquin Reyna, Minori Aoki, Mikkel Rasmussen, Jeremy P Gygi

bioRxiv· August 2023

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Predictive overfitting in immunological applications: Pitfalls and solutions.
Jeremy P Gygi, Steven H Kleinstein, Leying Guan

Hum Vaccin Immunother· August 2023

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Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients.
Joann Diray-Arce, Slim Fourati, Naresh Doni Jayavelu, Ravi Patel, Cole Maguire, Jeremy P Gygi

Cell Rep Med· June 2023

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Assessing interference in isobaric tag-based sample multiplexing using an 18-plex interference standard.
Jose Navarrete-Perea, Xinyue Liu, Ramin Rad, Jeremy P Gygi, Steven P Gygi

Proteomics· April 2022

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A Triple Knockout Isobaric-Labeling Quality Control Platform with an Integrated Online Database Search.
Jeremy P Gygi, Ramin Rad, Jose Navarrete-Perea, Simon Younesi, Steven P Gygi

J Am Soc Mass Spectrom· July 2020

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Web-Based Search Tool for Visualizing Instrument Performance Using the Triple Knockout (TKO) Proteome Standard.
Jeremy P Gygi, Qing Yu, Jose Navarrete-Perea, Ramin Rad, Steven P Gygi

J Proteome Res· February 2019

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ACP Acylation Is an Acetyl-CoA-Dependent Modification Required for Electron Transport Chain Assembly.
Jonathan G Van Vranken, Sara M Nowinski, Katie J Clowers, Mi-Young Jeong, Yeyun Ouyang, Jeremy P Gygi, Steven P Gygi

Mol Cell· August 2018

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