Publications by authors named "Jesse van Dam"

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SALARECON connects the Atlantic salmon genome to growth and feed efficiency.
Maksim Zakhartsev, Filip Rotnes, Marie Gulla, Ove Øyås, Jesse C J van Dam

PLoS Comput Biol· June 2022

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NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis.
Wasin Poncheewin, Gerben D A Hermes, Jesse C J van Dam, Jasper J Koehorst, Hauke Smidt

Front Genet· January 2020

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The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.
Jesse C J van Dam, Jasper J Koehorst, Jon Olav Vik, Vitor A P Martins Dos Santos, Peter J Schaap

Sci Data· November 2019

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Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling.
Nhung Pham, Ruben G A van Heck, Jesse C J van Dam, Peter J Schaap, Edoardo Saccenti

Metabolites· February 2019

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SyNDI: synchronous network data integration framework.
Erno Lindfors, Jesse C J van Dam, Carolyn Ming Chi Lam, Niels A Zondervan, Vitor A P Martins Dos Santos

BMC Bioinformatics· November 2018

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SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
Jasper J Koehorst, Jesse C J van Dam, Edoardo Saccenti, Vitor A P Martins Dos Santos, Maria Suarez-Diez

Bioinformatics· April 2018

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Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story.
Niels A Zondervan, Jesse C J van Dam, Peter J Schaap, Vitor A P Martins Dos Santos, Maria Suarez-Diez

Int J Mol Sci· January 2018

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Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data.
Jasper J Koehorst, Jesse C J van Dam, Ruben G A van Heck, Edoardo Saccenti, Vitor A P Martins Dos Santos

Sci Rep· December 2016

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RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.
Jesse Cj van Dam, Jasper J Koehorst, Peter J Schaap, Vitor Ap Martins Dos Santos, Maria Suarez-Diez

J Biomed Semantics· October 2015

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Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis.
Jesse C J van Dam, Peter J Schaap, Vitor A P Martins dos Santos, María Suárez-Diez

BMC Syst Biol· September 2014

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GeneFriends: an online co-expression analysis tool to identify novel gene targets for aging and complex diseases.
Sipko van Dam, Rui Cordeiro, Thomas Craig, Jesse van Dam, Shona H Wood

BMC Genomics· October 2012

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