Publications by authors named "Jim Spain"

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Designing a blended microbial culture to bioremediate distinct environmental matrices from a complex industrial site contaminated with amino-, nitro-, and chloroaromatic compounds.
Isabelle Câmara, Natanna Melo, Line Lomheim, E Erin Mack, Elizabeth A Edwards, Jim C Spain

Environ Res· November 2025

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To the Editor: Conventions for reporting biodegradation rates.
Jim Spain

J Hazard Mater· August 2025

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Dechlorinates Dichloroanilines and Contributes to the Natural Attenuation of Dichloronitrobenzenes at a Complex Industrial Site.
Sofia P Araújo, Line Lomheim, Suzana P Q Kraus, Elizabeth Erin Mack, Jim C Spain

Environ Sci Technol· July 2025

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Discovery of the 1-naphthylamine biodegradation pathway reveals a broad-substrate-spectrum enzyme catalyzing 1-naphthylamine glutamylation.
Shu-Ting Zhang, Shi-Kai Deng, Tao Li, Megan E Maloney, De-Feng Li, Jim C Spain

Elife· August 2024

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Compound-Specific Carbon, Nitrogen, and Hydrogen Isotope Analysis to Characterize Aerobic Biodegradation of 2,3-Dichloroaniline by a Mixed Enrichment Culture.
Shamsunnahar Suchana, Sofia Pimentel Araujo, Line Lomheim, E Erin Mack, Jim C Spain

Environ Sci Technol· July 2024

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Use of qPCR to monitor 2,4-dinitroanisole degrading bacteria in water and soil slurry cultures.
Lisa A Waidner, Carrie E Daniel, Sarah E Kovar, Jim C Spain

J Ind Microbiol Biotechnol· January 2024

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A cytochrome P450 system initiates 4-nitroanisole degradation in Rhodococcus sp. strain JS3073.
Shu-Ting Zhang, Tao Li, Shi-Kai Deng, Jim C Spain, Ning-Yi Zhou

J Hazard Mater· September 2023

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Novel catabolic pathway for 4-Nitroaniline in a Rhodococcus sp. strain JS360.
Zohre Kurt, Yi Qu, Jim C Spain

J Hazard Mater· July 2023

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Molecular Basis and Evolutionary Origin of 1-Nitronaphthalene Catabolism in sp. Strain JS3065.
Tao Li, Jia Xu, Amy L Brower, Zhi-Jing Xu, Ying Xu, Jim C Spain

Appl Environ Microbiol· January 2023

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Designing bacterial consortia for the complete biodegradation of insensitive munitions compounds in waste streams.
Osmar Menezes, Cameron Owens, Erika E Rios-Valenciana, Reyes Sierra-Alvarez, Jim A Field, Jim C Spain

Biotechnol Bioeng· September 2022

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Quinone Moieties Link the Microbial Respiration of Natural Organic Matter to the Chemical Reduction of Diverse Nitroaromatic Compounds.
Osmar Menezes, Kumru Kocaman, Stanley Wong, Erika E Rios-Valenciana, Eliot J Baker, Jim C Spain

Environ Sci Technol· July 2022

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Biodegradation of 3-Chloronitrobenzene and 3-Bromonitrobenzene by sp. Strain JS3051.
Zhi-Jing Xu, Jim C Spain, Ning-Yi Zhou, Tao Li

Appl Environ Microbiol· April 2022

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A novel, divergent alkane monooxygenase (alkB) clade involved in crude oil biodegradation.
Smruthi Karthikeyan, Janet K Hatt, Minjae Kim, Jim C Spain, Markus Huettel

Environ Microbiol Rep· December 2021

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A Recently Assembled Degradation Pathway for 2,3-Dichloronitrobenzene in sp. Strain JS3051.
Tao Li, Yi-Zhou Gao, Jia Xu, Shu-Ting Zhang, Yuan Guo, Jim C Spain

mBio· August 2021

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Physiological Role of the Previously Unexplained Benzenetriol Dioxygenase Homolog in the sp. Strain SJ98 4-Nitrophenol Catabolism Pathway.
Juan Liu, Ying Xu, Shi-Kai Deng, Lei Liu, Jun Min, Jim C Spain

Appl Environ Microbiol· June 2021

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Bacteria Make a Living Breathing the Nitroheterocyclic Insensitive Munitions Compound 3-Nitro-1,2,4-triazol-5-one (NTO).
Camila L Madeira, Osmar Menezes, Doyoung Park, Kalyani V Jog, Janet K Hatt, Jim C Spain

Environ Sci Technol· May 2021

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A Nag-like dioxygenase initiates 3,4-dichloronitrobenzene degradation via 4,5-dichlorocatechol in Diaphorobacter sp. strain JS3050.
Yi-Zhou Gao, Mallory L Palatucci, Lisa A Waidner, Tao Li, Yuan Guo, Jim C Spain

Environ Microbiol· February 2021

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Integrated Omics Elucidate the Mechanisms Driving the Rapid Biodegradation of Deepwater Horizon Oil in Intertidal Sediments Undergoing Oxic-Anoxic Cycles.
Smruthi Karthikeyan, Minjae Kim, Patrick Heritier-Robbins, Janet K Hatt, Jim C Spain

Environ Sci Technol· August 2020

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Microbial Enrichment Culture Responsible for the Complete Oxidative Biodegradation of 3-Amino-1,2,4-triazol-5-one (ATO), the Reduced Daughter Product of the Insensitive Munitions Compound 3-Nitro-1,2,4-triazol-5-one (NTO).
Camila L Madeira, Kalyani V Jog, Erica T Vanover, Matthew D Brooks, David K Taylor, Jim C Spain

Environ Sci Technol· November 2019

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Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer.
Luis H Orellana, Janet K Hatt, Ramsunder Iyer, Karuna Chourey, Robert L Hettich, Jim C Spain

Sci Rep· November 2019

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Aerobic biodegradation of 2,3- and 3,4-dichloronitrobenzene.
Mallory L Palatucci, Lisa A Waidner, E Erin Mack, Jim C Spain

J Hazard Mater· October 2019

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"Candidatus Macondimonas diazotrophica", a novel gammaproteobacterial genus dominating crude-oil-contaminated coastal sediments.
Smruthi Karthikeyan, Luis M Rodriguez-R, Patrick Heritier-Robbins, Minjae Kim, Will A Overholt, Jim C Spain

ISME J· August 2019

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Biodegradation of the Allelopathic Chemical Pterostilbene by a sp. Strain from the Peanut Rhizosphere.
Ri-Qing Yu, Zohre Kurt, Fei He, Jim C Spain

Appl Environ Microbiol· March 2019

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The molecular basis for the intramolecular migration (NIH shift) of the carboxyl group during para-hydroxybenzoate catabolism.
Huan Zhao, Ying Xu, Shuangjun Lin, Jim C Spain, Ning-Yi Zhou

Mol Microbiol· November 2018

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Resveratrol as a Growth Substrate for Bacteria from the Rhizosphere.
Zohre Kurt, Marco Minoia, Jim C Spain

Appl Environ Microbiol· May 2018

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