Publications by authors named "Jim Swoger"

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Multiscale Three-Dimensional Evaluation and Analysis of Murine Lung Vasculature From Macro- to Micro-Structural Level.
Birger Tielemans, Nora F Marain, Axelle Kerstens, Nicolas Peredo, Montserrat Coll-Lladó, Jim Swoger

Pulm Circ· January 2025

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Challenges and advances in optical 3D mesoscale imaging.
Sebastian Munck, Christopher Cawthorne, Abril Escamilla-Ayala, Axelle Kerstens, Sergio Gabarre, Jim Swoger

J Microsc· June 2022

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REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Ugis Sarkans, Wah Chiu, Lucy Collinson, Michele C Darrow, Jan Ellenberg, Jim Swoger

Nat Methods· December 2021

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Maximizing content across scales: Moving multimodal microscopy and mesoscopy toward molecular imaging.
Sebastian Munck, Jim Swoger, Montserrat Coll-Lladó, Nicola Gritti, Greetje Vande Velde

Curr Opin Chem Biol· August 2021

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From Mouse to Man and Back: Closing the Correlation Gap between Imaging and Histopathology for Lung Diseases.
Birger Tielemans, Kaat Dekoster, Stijn E Verleden, Stefan Sawall, Bartosz Leszczyński, Jim Swoger

Diagnostics (Basel)· August 2020

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Attenuation artifacts in light sheet fluorescence microscopy corrected by OPTiSPIM.
Jürgen Mayer, Alexandre Robert-Moreno, James Sharpe, Jim Swoger

Light Sci Appl· October 2018

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Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis.
Neus Martínez-Abadías, Roger Mateu Estivill, Jaume Sastre Tomas, Susan Motch Perrine, Melissa Yoon, Jim Swoger

Elife· September 2018

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Antigen Availability and DOCK2-Driven Motility Govern CD4 T Cell Interactions with Dendritic Cells In Vivo.
Markus Ackerknecht, Kathrin Gollmer, Philipp Germann, Xenia Ficht, Jun Abe, Jim Swoger

J Immunol· July 2017

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Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae.
Marie Trussart, Eva Yus, Sira Martinez, Davide Baù, Yuhei O Tahara, Jim Swoger

Nat Commun· March 2017

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pMHC affinity controls duration of CD8+ T cell-DC interactions and imprints timing of effector differentiation versus expansion.
Aleksandra J Ozga, Federica Moalli, Jun Abe, Jim Swoger, James Sharpe

J Exp Med· November 2016

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Compensatory Cell Movements Confer Robustness to Mechanical Deformation during Embryonic Development.
Rob Jelier, Angela Kruger, Jim Swoger, Timo Zimmermann, Ben Lehner

Cell Syst· August 2016

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Light sheet fluorescence microscopy for in situ cell interaction analysis in mouse lymph nodes.
Jun Abe, Aleksandra J Ozga, Jim Swoger, James Sharpe, Jorge Ripoll

J Immunol Methods· April 2016

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Decrease in Cell Volume Generates Contractile Forces Driving Dorsal Closure.
Laure Saias, Jim Swoger, Arturo D'Angelo, Peran Hayes, Julien Colombelli

Dev Cell· June 2015

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OPTiSPIM: integrating optical projection tomography in light sheet microscopy extends specimen characterization to nonfluorescent contrasts.
Jürgen Mayer, Alexandre Robert-Moreno, Renzo Danuser, Jens V Stein, James Sharpe, Jim Swoger

Opt Lett· February 2014

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Light-sheet-based fluorescence microscopy for three-dimensional imaging of biological samples.
Jim Swoger, Francesco Pampaloni, Ernst H K Stelzer

Cold Spring Harb Protoc· January 2014

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Imaging cellular spheroids with a single (selective) plane illumination microscope.
Jim Swoger, Francesco Pampaloni, Ernst H K Stelzer

Cold Spring Harb Protoc· January 2014

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Imaging MDCK cysts with a single (selective) plane illumination microscope.
Jim Swoger, Francesco Pampaloni, Ernst H K Stelzer

Cold Spring Harb Protoc· January 2014

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Intravital imaging of hair-cell development and regeneration in the zebrafish.
Filipe Pinto-Teixeira, Mariana Muzzopappa, Jim Swoger, Alessandro Mineo, James Sharpe

Front Neuroanat· October 2013

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Naive B-cell trafficking is shaped by local chemokine availability and LFA-1-independent stromal interactions.
Fernanda M Coelho, Daniela Natale, Silvia F Soriano, Miroslav Hons, Jim Swoger

Blood· May 2013

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Quantitative measurements in 3-dimensional datasets of mouse lymph nodes resolve organ-wide functional dependencies.
Jürgen Mayer, Jim Swoger, Aleksandra J Ozga, Jens V Stein, James Sharpe

Comput Math Methods Med· March 2013

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Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles.
Omar E Olarte, Jacob Licea-Rodriguez, Jonathan A Palero, Emilio J Gualda, David Artigas, Jim Swoger

Biomed Opt Express· July 2012

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4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies.
Jim Swoger, Mariana Muzzopappa, Hernán López-Schier, James Sharpe

J Biophotonics· January 2011

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The role of spatially controlled cell proliferation in limb bud morphogenesis.
Bernd Boehm, Henrik Westerberg, Gaja Lesnicar-Pucko, Sahdia Raja, Michael Rautschka, Jim Swoger

PLoS Biol· July 2010

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Multi-view image fusion improves resolution in three-dimensional microscopy.
Jim Swoger, Peter Verveer, Klaus Greger, Jan Huisken, Ernst H K Stelzer

Opt Express· June 2007

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High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.
Peter J Verveer, Jim Swoger, Francesco Pampaloni, Klaus Greger, Marco Marcello

Nat Methods· April 2007

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