Publications by authors named "Jimmy Caroli"

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GPCRdb in 2025: adding odorant receptors, data mapper, structure similarity search and models of physiological ligand complexes.
Luis P Taracena Herrera, Søren N Andreassen, Jimmy Caroli, Ismael Rodríguez-Espigares, Ali A Kermani

Nucleic Acids Res· January 2025

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PGxDB: an interactive web-platform for pharmacogenomics research.
Trinh Trung Duong Nguyen, Ziaurrehman Tanoli, Saad Hassan, Umut Onur Özcan, Jimmy Caroli

Nucleic Acids Res· January 2025

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GproteinDb in 2024: new G protein-GPCR couplings, AlphaFold2-multimer models and interface interactions.
Gáspár Pándy-Szekeres, Luis P Taracena Herrera, Jimmy Caroli, Ali A Kermani, Yashraj Kulkarni

Nucleic Acids Res· January 2024

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A community Biased Signaling Atlas.
Jimmy Caroli, Alibek Mamyrbekov, Kasper Harpsøe, Sahar Gardizi, Linda Dörries

Nat Chem Biol· May 2023

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GPCRdb in 2023: state-specific structure models using AlphaFold2 and new ligand resources.
Gáspár Pándy-Szekeres, Jimmy Caroli, Alibek Mamyrbekov, Ali A Kermani, György M Keserű

Nucleic Acids Res· January 2023

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popsicleR: A R Package for Pre-processing and Quality Control Analysis of Single Cell RNA-seq Data.
Francesco Grandi, Jimmy Caroli, Oriana Romano, Matteo Marchionni, Mattia Forcato

J Mol Biol· June 2022

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RNA aptamers specific for transmembrane p24 trafficking protein 6 and Clusterin for the targeted delivery of imaging reagents and RNA therapeutics to human β cells.
Dimitri Van Simaeys, Adriana De La Fuente, Serena Zilio, Alessia Zoso, Victoria Kuznetsova, Jimmy Caroli

Nat Commun· April 2022

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Circr, a Computational Tool to Identify miRNA:circRNA Associations.
Martina Dori, Jimmy Caroli, Mattia Forcato

Front Bioinform· March 2022

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The G protein database, GproteinDb.
Gáspár Pándy-Szekeres, Mauricio Esguerra, Alexander S Hauser, Jimmy Caroli, Christian Munk

Nucleic Acids Res· January 2022

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Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ.
Giulia Della Chiara, Federica Gervasoni, Michaela Fakiola, Chiara Godano, Claudia D'Oria, Jimmy Caroli

Nat Commun· April 2021

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Aptamers against mouse and human tumor-infiltrating myeloid cells as reagents for targeted chemotherapy.
Adriana De La Fuente, Serena Zilio, Jimmy Caroli, Dimitri Van Simaeys, Emilia M C Mazza

Sci Transl Med· June 2020

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APTANI2: update of aptamer selection through sequence-structure analysis.
Jimmy Caroli, Mattia Forcato, Silvio Bicciato

Bioinformatics· April 2020

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Computational Methods for the Integrative Analysis of Genomics and Pharmacological Data.
Jimmy Caroli, Martina Dori, Silvio Bicciato

Front Oncol· February 2020

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GDA, a web-based tool for Genomics and Drugs integrated analysis.
Jimmy Caroli, Giovanni Sorrentino, Mattia Forcato, Giannino Del Sal, Silvio Bicciato

Nucleic Acids Res· July 2018

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MDP, a database linking drug response data to genomic information, identifies dasatinib and statins as a combinatorial strategy to inhibit YAP/TAZ in cancer cells.
Cristian Taccioli, Giovanni Sorrentino, Alessandro Zannini, Jimmy Caroli, Domenico Beneventano

Oncotarget· November 2015

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