Publications by authors named "Jing-Wen Lin"

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Machine learning-based prediction reveals kinase MAP4K4 regulates neutrophil differentiation through phosphorylating apoptosis-related proteins.
Guihua Wang, Dan Zhang, Zhifeng He, Bin Mao, Xiao Hu, Kepan Linghu, Yishan Lin, Jing-Wen Lin

PLoS Comput Biol· March 2025

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DEMINERS enables clinical metagenomics and comparative transcriptomic analysis by increasing throughput and accuracy of nanopore direct RNA sequencing.
Junwei Song, Li-An Lin, Chao Tang, Chuan Chen, Qingxin Yang, Kepan Linghu, Jing-Wen Lin

Genome Biol· March 2025

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Online peer support communities in the infertility journey: A systematic mixed-studies review.
Jing Wen Lin, Shefaly Shorey

Int J Nurs Stud· April 2023

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Monocytic HLA-DR Expression in Immune Responses of Acute Pancreatitis and COVID-19.
Shiyu Liu, Wenjuan Luo, Peter Szatmary, Xiaoying Zhang, Jing-Wen Lin

Int J Mol Sci· February 2023

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Circulating monocytes in acute pancreatitis.
Shiyu Liu, Peter Szatmary, Jing-Wen Lin, Qiqi Wang, Robert Sutton

Front Immunol· December 2022

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Aberrant expression of long non-coding RNAs in peripheral blood mononuclear cells response to tuberculosis in children.
Xiaoling Zhong, Shikun Lei, Jing-Wen Lin, Min Ren, Min Shu

Medicine (Baltimore)· October 2022

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SCAPE: a mixture model revealing single-cell polyadenylation diversity and cellular dynamics during cell differentiation and reprogramming.
Ran Zhou, Xia Xiao, Ping He, Yuancun Zhao, Mengying Xu, Jing-Wen Lin

Nucleic Acids Res· June 2022

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Editorial: Malaria Targeting Toolkit: Host-Parasite Interactions.
Tamasa Araki, Jing-Wen Lin, Miguel Prudêncio, Deirdre A Cunningham, Takeshi Annoura

Front Cell Infect Microbiol· January 2022

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Integrated single-cell RNA sequencing analysis reveals distinct cellular and transcriptional modules associated with survival in lung cancer.
Li Zhang, Yiming Zhang, Chengdi Wang, Ying Yang, Yinyun Ni, Menglin Yao, Jing-Wen Lin

Signal Transduct Target Ther· January 2022

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Short-read and long-read RNA sequencing of mouse hematopoietic stem cells at bulk and single-cell levels.
Xiuran Zheng, Dan Zhang, Mengying Xu, Wanqin Zeng, Ran Zhou, Jing-Wen Lin

Sci Data· November 2021

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Differential immune responses in pregnant patients recovered from COVID-19.
Ge Chen, Yiming Zhang, Yaoyao Zhang, Jihui Ai, Bin Yang, Hualin Bai, Jing-Wen Lin

Signal Transduct Target Ther· July 2021

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Tissue macrophages and interferon-gamma signalling control blood-stage infections derived from mosquito-transmitted parasites.
Katrien Deroost, Christopher Alder, Caroline Hosking, Sarah McLaughlin, Jing-Wen Lin

Curr Res Immunol· July 2021

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Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response.
Jing-Wen Lin, Chao Tang, Han-Cheng Wei, Baowen Du, Chuan Chen, Chang-Ling Li, Ling Cao, Lingyu Jiang

Cell Host Microbe· March 2021

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MeDAS: a Metazoan Developmental Alternative Splicing database.
Zhidan Li, Yiming Zhang, Stephen J Bush, Chao Tang, Li Chen, Jing-Wen Lin

Nucleic Acids Res· January 2021

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Paired rRNA-depleted and polyA-selected RNA sequencing data and supporting multi-omics data from human T cells.
Li Chen, Ruirui Yang, Tony Kwan, Chao Tang, Stephen Watt, Jing-Wen Lin

Sci Data· November 2020

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Transcriptome analysis of blood and spleen in virulent and avirulent mouse malaria infection.
Yuancun Zhao, Caroline Hosking, Deirdre Cunningham, Jean Langhorne, Jing-Wen Lin

Sci Data· August 2020

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Comparison of whole blood and spleen transcriptional signatures over the course of an experimental malaria infection.
Carlos Talavera-López, Yaw Bediako, Jing-Wen Lin, John Joseph Valletta, Mario Recker

Sci Rep· November 2019

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Transcriptional profiling unveils type I and II interferon networks in blood and tissues across diseases.
Akul Singhania, Christine M Graham, Leona Gabryšová, Lúcia Moreira-Teixeira, Evangelos Stavropoulos, Jing-Wen Lin

Nat Commun· June 2019

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Repeated clinical malaria episodes are associated with modification of the immune system in children.
Yaw Bediako, Rhys Adams, Adam J Reid, John Joseph Valletta, Francis M Ndungu, Jing-Wen Lin

BMC Med· March 2019

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Correction to: Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling.
Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-Wen Lin, Jean Langhorne

BMC Res Notes· January 2019

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Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern.
Jing-Wen Lin, Adam J Reid, Deirdre Cunningham, Ulrike Böhme, Irene Tumwine, Sara Keller-Mclaughlin

Wellcome Open Res· December 2018

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Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling.
Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-Wen Lin, Jean Langhorne

BMC Res Notes· December 2018

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Expression of full-length Plasmodium falciparum P48/45 in P. berghei blood stages: A method to express and evaluate vaccine antigens.
Ahmad Syibli Othman, Jing-Wen Lin, Blandine M Franke-Fayard, Hans Kroeze, Fiona J A van Pul

Mol Biochem Parasitol· September 2018

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Deletion of the rodent malaria ortholog for falcipain-1 highlights differences between hepatic and blood stage merozoites.
Christine S Hopp, Brandy L Bennett, Satish Mishra, Christine Lehmann, Kirsten K Hanson, Jing-Wen Lin, Wouter A van der Linden

PLoS Pathog· September 2017

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products persist in the bone marrow and promote chronic bone loss.
Michelle S J Lee, Kenta Maruyama, Yukiko Fujita, Aki Konishi, Patrick M Lelliott, Jing-Wen Lin

Sci Immunol· June 2017

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