Publications by authors named "Jinzhuang Dou"

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Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples.
Nejla Ozirmak Lermi, Max Molina Ayala, Sharia Hernandez, Wei Lu, Khaja Khan, Jinzhuang Dou

Nat Commun· September 2025

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Depletion of Effector Regulatory T Cells Associates with Major Response to Induction Dual Immune Checkpoint Blockade.
Xianli Jiang, Nils-Petter Rudqvist, Bo Jiang, Shengbin Ye, Shan He, Jinzhuang Dou

Cancer Discov· August 2025

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CREM is a regulatory checkpoint of CAR and IL-15 signalling in NK cells.
Hind Rafei, Rafet Basar, Sunil Acharya, Yu-Sung Hsu, Pinghua Liu, Jinzhuang Dou

Nature· July 2025

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Comparison of imaging-based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed, paraffin-embedded tumor samples.
Nejla Ozirmak Lermi, Max Molina Ayala, Sharia Hernandez Ruiz, Wei Lu, Khaja Khan, Jinzhuang Dou

Res Sq· January 2025

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Stem cell activity-coupled suppression of endogenous retrovirus governs adult tissue regeneration.
Ying Lyu, Soo Jin Kim, Ericka S Humphrey, Richa Nayak, Yinglu Guan, Jinzhuang Dou

Cell· December 2024

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A statistical approach for systematic identification of transition cells from scRNA-seq data.
Yuanxin Wang, Merve Dede, Vakul Mohanty, Jinzhuang Dou, Ziyi Li

Cell Rep Methods· December 2024

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Comparison of imaging-based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed, paraffin-embedded tumor samples.
Nejla Ozirmak Lermi, Max Molina Ayala, Sharia Hernandez, Wei Lu, Khaja Khan, Jinzhuang Dou

bioRxiv· December 2024

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Temporal recording of mammalian development and precancer.
Mirazul Islam, Yilin Yang, Alan J Simmons, Vishal M Shah, Krushna Pavan Musale, Jinzhuang Dou, Douglas J Winton

Nature· October 2024

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BATF is a major driver of NK cell epigenetic reprogramming and dysfunction in AML.
Bijender Kumar, Anand Singh, Rafet Basar, Nadima Uprety, Ye Li, Jinzhuang Dou

Sci Transl Med· September 2024

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Interleukin-21 engineering enhances NK cell activity against glioblastoma via CEBPD.
Mayra Shanley, May Daher, Jinzhuang Dou, Sufang Li, Rafet Basar

Cancer Cell· August 2024

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Forecasting acute kidney injury and resource utilization in ICU patients using longitudinal, multimodal models.
Yukun Tan, Merve Dede, Vakul Mohanty, Jinzhuang Dou, Holly Hill

J Biomed Inform· June 2024

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Single-nucleotide variant calling in single-cell sequencing data with Monopogen.
Jinzhuang Dou, Yukun Tan, Kian Hong Kock, Jun Wang, Xuesen Cheng

Nat Biotechnol· May 2024

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Safety, efficacy and determinants of response of allogeneic CD19-specific CAR-NK cells in CD19 B cell tumors: a phase 1/2 trial.
David Marin, Ye Li, Rafet Basar, Hind Rafei, May Daher, Jinzhuang Dou

Nat Med· March 2024

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Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data.
Shaoheng Liang, Jinzhuang Dou, Ramiz Iqbal, Ken Chen

Commun Biol· March 2024

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Forecasting Acute Kidney Injury and Resource Utilization in ICU patients using longitudinal, multimodal models.
Yukun Tan, Merve Dede, Vakul Mohanty, Jinzhuang Dou, Holly Hill

medRxiv· March 2024

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Temporal recording of mammalian development and precancer.
Mirazul Islam, Yilin Yang, Alan J Simmons, Vishal M Shah, Musale Krushna Pavan, Jinzhuang Dou, Douglas Winton

bioRxiv· December 2023

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Editorial: Advances in mathematical and computational oncology, volume III.
George Bebis, Mamoru Kato, Mohammad Kohandel, Kathleen Wilkie, Dinler A Antunes, Jinzhuang Dou

Front Oncol· September 2023

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Loss of metabolic fitness drives tumor resistance after CAR-NK cell therapy and can be overcome by cytokine engineering.
Li Li, Vakul Mohanty, Jinzhuang Dou, Yuefan Huang, Pinaki P Banerjee

Sci Adv· July 2023

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Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data.
Shaoheng Liang, Jinzhuang Dou, Ramiz Iqbal, Ken Chen

Res Sq· July 2023

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Novornabreak: Local Assembly for Novel Splice Junction and Fusion Transcript Detection from RNA-Seq Data.
Yukun Tan, Vakul Mohanty, Shaoheng Liang, Jinzhuang Dou, Jun Ma

J Bioinform Syst Biol· April 2023

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Direct CD32 T-cell cytotoxicity: implications for breast cancer prognosis and treatment.
Giuseppe Sconocchia, Giulia Lanzilli, Valeriana Cesarini, Domenico A Silvestris, Katayoun Rezvani, Jinzhuang Dou

Life Sci Alliance· December 2022

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KLF5 governs sphingolipid metabolism and barrier function of the skin.
Ying Lyu, Yinglu Guan, Lisa Deliu, Ericka Humphrey, Joanna K Frontera, Jinzhuang Dou

Genes Dev· August 2022

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Bi-order multimodal integration of single-cell data.
Jinzhuang Dou, Shaoheng Liang, Vakul Mohanty, Qi Miao, Yuefan Huang

Genome Biol· May 2022

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Sensei: how many samples to tell a change in cell type abundance?
Shaoheng Liang, Jason Willis, Jinzhuang Dou, Vakul Mohanty, Yuefan Huang

BMC Bioinformatics· January 2022

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Systematic decomposition of sequence determinants governing CRISPR/Cas9 specificity.
Rongjie Fu, Wei He, Jinzhuang Dou, Oscar D Villarreal, Ella Bedford

Nat Commun· January 2022

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