Publications by authors named "Joe Greener"

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Reversible molecular simulation for training classical and machine-learning force fields.
Joe G Greener

Proc Natl Acad Sci U S A· June 2025

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Molecular mechanism of Mad2 conformational conversion promoted by the Mad2-interaction motif of Cdc20.
Conny W H Yu, Elyse S Fischer, Joe G Greener, Jing Yang, Ziguo Zhang

Protein Sci· April 2025

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Fast protein structure searching using structure graph embeddings.
Joe G Greener, Kiarash Jamali

Bioinform Adv· March 2024

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Differentiable simulation to develop molecular dynamics force fields for disordered proteins.
Joe G Greener

Chem Sci· March 2024

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Julia for biologists.
Elisabeth Roesch, Joe G Greener, Adam L MacLean, Huda Nassar, Christopher Rackauckas

Nat Methods· May 2023

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Author Correction: Julia for biologists.
Elisabeth Roesch, Joe G Greener, Adam L MacLean, Huda Nassar, Christopher Rackauckas

Nat Methods· May 2023

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A guide to machine learning for biologists.
Joe G Greener, Shaun M Kandathil, Lewis Moffat, David T Jones

Nat Rev Mol Cell Biol· January 2022

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Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins.
Shaun M Kandathil, Joe G Greener, Andy M Lau, David T Jones

Proc Natl Acad Sci U S A· January 2022

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Differentiable molecular simulation can learn all the parameters in a coarse-grained force field for proteins.
Joe G Greener, David T Jones

PLoS One· November 2021

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BioStructures.jl: read, write and manipulate macromolecular structures in Julia.
Joe G Greener, Joel Selvaraj, Ben J Ward

Bioinformatics· August 2020

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Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.
Shaun M Kandathil, Joe G Greener, David T Jones

Proteins· December 2019

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Recent developments in deep learning applied to protein structure prediction.
Shaun M Kandathil, Joe G Greener, David T Jones

Proteins· December 2019

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Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints.
Joe G Greener, Shaun M Kandathil, David T Jones

Nat Commun· September 2019

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Design of metalloproteins and novel protein folds using variational autoencoders.
Joe G Greener, Lewis Moffat, David T Jones

Sci Rep· November 2018

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Structure-based prediction of protein allostery.
Joe G Greener, Michael Je Sternberg

Curr Opin Struct Biol· June 2018

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High-Throughput Kinetic Analysis for Target-Directed Covalent Ligand Discovery.
Gregory B Craven, Dominic P Affron, Charlotte E Allen, Stefan Matthies, Joe G Greener

Angew Chem Int Ed Engl· May 2018

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Predicting Protein Dynamics and Allostery Using Multi-Protein Atomic Distance Constraints.
Joe G Greener, Ioannis Filippis, Michael J E Sternberg

Structure· March 2017

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AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis.
Joe G Greener, Michael J E Sternberg

BMC Bioinformatics· October 2015

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Services just for men? Insights from a national study of the Well Men Services Pilots.
Flora C G Douglas, Joe Greener, Edwin van Teijlingen, Anne Ludbrook

BMC Public Health· May 2013

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More of the same? Conflicting perspectives of obesity causation and intervention amongst overweight people, health professionals and policy makers.
Joe Greener, Flora Douglas, Edwin van Teijlingen

Soc Sci Med· April 2010

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