Publications by authors named "Johannes Geiselmann"

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Single-cell data reveal heterogeneity of investment in ribosomes across a bacterial population.
Antrea Pavlou, Eugenio Cinquemani, Corinne Pinel, Nils Giordano, Van Melle-Gateau Mathilde, Johannes Geiselmann

Nat Commun· January 2025

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Improving the genetic stability of bacterial growth control for long-term bioproduction.
Thibault Clavier, Corinne Pinel, Hidde de Jong, Johannes Geiselmann

Biotechnol Bioeng· September 2024

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Maturation models of fluorescent proteins are necessary for unbiased estimates of promoter activity.
Antrea Pavlou, Eugenio Cinquemani, Johannes Geiselmann, Hidde de Jong

Biophys J· November 2022

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Multiomics Study of Bacterial Growth Arrest in a Synthetic Biology Application.
Delphine Ropers, Yohann Couté, Laëtitia Faure, Sabrina Ferré, Delphine Labourdette, Johannes Geiselmann

ACS Synth Biol· November 2021

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Acetate Metabolism and the Inhibition of Bacterial Growth by Acetate.
Stéphane Pinhal, Delphine Ropers, Johannes Geiselmann, Hidde de Jong

J Bacteriol· July 2019

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An ensemble of mathematical models showing diauxic growth behaviour.
Andreas Kremling, Johannes Geiselmann, Delphine Ropers, Hidde de Jong

BMC Syst Biol· September 2018

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Mathematical modelling of microbes: metabolism, gene expression and growth.
Hidde de Jong, Stefano Casagranda, Nils Giordano, Eugenio Cinquemani, Delphine Ropers, Johannes Geiselmann

J R Soc Interface· November 2017

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Resource Reallocation in Bacteria by Reengineering the Gene Expression Machinery.
Hidde de Jong, Johannes Geiselmann, Delphine Ropers

Trends Microbiol· June 2017

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Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies.
Nils Giordano, Francis Mairet, Jean-Luc Gouzé, Johannes Geiselmann, Hidde de Jong

PLoS Comput Biol· March 2016

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A synthetic growth switch based on controlled expression of RNA polymerase.
Jérôme Izard, Cindy D C Gomez Balderas, Delphine Ropers, Stephan Lacour, Xiaohu Song, Johannes Geiselmann

Mol Syst Biol· November 2015

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Robust reconstruction of gene expression profiles from reporter gene data using linear inversion.
Valentin Zulkower, Michel Page, Delphine Ropers, Johannes Geiselmann, Hidde de Jong

Bioinformatics· June 2015

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Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis.
Clelia Peano, Johannes Wolf, Julien Demol, Elio Rossi, Luca Petiti, Johannes Geiselmann

Sci Rep· May 2015

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Inference of quantitative models of bacterial promoters from time-series reporter gene data.
Diana Stefan, Corinne Pinel, Stéphane Pinhal, Eugenio Cinquemani, Johannes Geiselmann

PLoS Comput Biol· January 2015

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Repression of flagellar genes in exponential phase by CsgD and CpxR, two crucial modulators of Escherichia coli biofilm formation.
Omaya Dudin, Johannes Geiselmann, Hiroshi Ogasawara, Akira Ishihama, Stéphan Lacour

J Bacteriol· February 2014

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Expression dynamics of RpoS/Crl-dependent genes in Escherichia coli.
Omaya Dudin, Stéphan Lacour, Johannes Geiselmann

Res Microbiol· October 2013

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Shared control of gene expression in bacteria by transcription factors and global physiology of the cell.
Sara Berthoumieux, Hidde de Jong, Guillaume Baptist, Corinne Pinel, Caroline Ranquet, Johannes Geiselmann

Mol Syst Biol· September 2013

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A genome-wide screen for identifying all regulators of a target gene.
Guillaume Baptist, Corinne Pinel, Caroline Ranquet, Jérôme Izard, Delphine Ropers, Johannes Geiselmann

Nucleic Acids Res· September 2013

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Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks.
Grégory Batt, Bruno Besson, Pierre-Emmanuel Ciron, Hidde de Jong, Estelle Dumas, Johannes Geiselmann

Methods Mol Biol· March 2012

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Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli.
Valentina Baldazzi, Delphine Ropers, Johannes Geiselmann, Daniel Kahn, Hidde de Jong

J Theor Biol· February 2012

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The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes.
Valentina Baldazzi, Delphine Ropers, Yves Markowicz, Daniel Kahn, Johannes Geiselmann

PLoS Comput Biol· June 2010

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WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data.
Frédéric Boyer, Bruno Besson, Guillaume Baptist, Jérôme Izard, Corinne Pinel, Johannes Geiselmann

Bioinformatics· May 2010

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Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria.
Hidde de Jong, Caroline Ranquet, Delphine Ropers, Corinne Pinel, Johannes Geiselmann

BMC Syst Biol· April 2010

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Mutual regulation of Crl and Fur in Escherichia coli W3110.
Cécile Lelong, Magali Rolland, Mathilde Louwagie, Jérôme Garin, Johannes Geiselmann

Mol Cell Proteomics· April 2007

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The Crl-RpoS regulon of Escherichia coli.
Cécile Lelong, Kryssia Aguiluz, Sylvie Luche, Lauriane Kuhn, Jérôme Garin, Johannes Geiselmann

Mol Cell Proteomics· April 2007

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Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli.
Ludovic Pelosi, Lauriane Kühn, Dorian Guetta, Jérôme Garin, Johannes Geiselmann

Genetics· August 2006

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