Publications by authors named "Johannes Textor"

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Cytotoxic T cells are able to efficiently eliminate cancer cells by additive cytotoxicity.
Bettina Weigelin, Annemieke Th den Boer, Esther Wagena, Kelly Broen, Harry Dolstra, Rob J de Boer, Carl G Figdor, Johannes Textor, Peter Friedl

Nat Commun· September 2021

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Systematic analysis of immune cell motility leveraging the open intravital microscopy database Immunemap.
Diego Ulisse Pizzagalli, Pau Carrillo-Barberà, Himanshu Bansal, Elisa Palladino, Kevin Ceni, Johannes Textor

EMBO J· November 2025

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When will causal structure learning become practical?
Johannes Textor

Int J Epidemiol· August 2025

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Transvitreal Retinochoroidal Biopsies of Primary Uveal Melanoma Reveal an Association of Low HLA Class I and High NK Cell Abundance in Low-Risk Disease.
Kalijn Fredrike Bol, Mark Wilhelmus Dirk Sweep, Michael Douglas Crowther, Mark Antonius Johannes Gorris, Pedro Aroca Lara, Johannes Textor

Invest Ophthalmol Vis Sci· February 2025

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ImmuNet: a segmentation-free machine learning pipeline for immune landscape phenotyping in tumors by multiplex imaging.
Shabaz Sultan, Mark A J Gorris, Evgenia Martynova, Lieke L van der Woude, Franka Buytenhuijs, Johannes Textor

Biol Methods Protoc· December 2024

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Adjuvant dendritic cell therapy in stage IIIB/C melanoma: the MIND-DC randomized phase III trial.
Kalijn F Bol, Gerty Schreibelt, Martine Bloemendal, Wouter W van Willigen, Simone Hins-de Bree, Johannes Textor

Nat Commun· February 2024

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Detection of dendritic cell subsets in the tumor microenvironment by multiplex immunohistochemistry.
Iris A E van der Hoorn, Evgenia Martynova, Beatriz Subtil, Jelena Meek, Kiek Verrijp, Johannes Textor

Eur J Immunol· January 2024

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Identifiability of causal effects in test-negative design studies.
Ian Shrier, Steven D Stovitz, Johannes Textor

Int J Epidemiol· December 2023

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Machine learning analysis of the T cell receptor repertoire identifies sequence features of self-reactivity.
Johannes Textor, Franka Buytenhuijs, Dakota Rogers, Ève Mallet Gauthier, Shabaz Sultan

Cell Syst· December 2023

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Multiplex Immunohistochemical Analysis of the Spatial Immune Cell Landscape of the Tumor Microenvironment.
Mark A J Gorris, Evgenia Martynova, Mark W D Sweep, Iris A E van der Hoorn, Shabaz Sultan, Johannes Textor

J Vis Exp· August 2023

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Flow rate resonance of actively deforming particles.
Daniel R Parisi, Lucas E Wiebke, Judith N Mandl, Johannes Textor

Sci Rep· June 2023

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In silico cancer immunotherapy trials uncover the consequences of therapy-specific response patterns for clinical trial design and outcome.
Jeroen H A Creemers, Ankur Ankan, Kit C B Roes, Gijs Schröder, Niven Mehra, Johannes Textor

Nat Commun· April 2023

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Interpreting T-cell search "strategies" in the light of evolution under constraints.
Inge M N Wortel, Johannes Textor

PLoS Comput Biol· February 2023

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Tumor microenvironment shows an immunological abscopal effect in patients with NSCLC treated with pembrolizumab-radiotherapy combination.
Lieke L van der Woude, Mark A J Gorris, Inge M N Wortel, Jeroen H A Creemers, Kiek Verrijp, Johannes Textor

J Immunother Cancer· October 2022

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Paired primary and metastatic lesions of patients with ipilimumab-treated melanoma: high variation in lymphocyte infiltration and HLA-ABC expression whereas tumor mutational load is similar and correlates with clinical outcome.
Mark A J Gorris, Lieke L van der Woude, Leonie I Kroeze, Kalijn Bol, Kiek Verrijp, Johannes Textor

J Immunother Cancer· May 2022

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Pre-existing chromatin accessibility and gene expression differences among naive CD4 T cells influence effector potential.
Dakota Rogers, Aditi Sood, HanChen Wang, Jasper J P van Beek, Thomas J Rademaker, Johannes Textor

Cell Rep· November 2021

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CelltrackR: An R package for fast and flexible analysis of immune cell migration data.
Inge M N Wortel, Annie Y Liu, Katharina Dannenberg, Jeffrey C Berry, Mark J Miller, Johannes Textor

Immunoinformatics (Amst)· October 2021

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Local actin dynamics couple speed and persistence in a cellular Potts model of cell migration.
Inge M N Wortel, Ioana Niculescu, P Martijn Kolijn, Nir S Gov, Rob J de Boer, Johannes Textor

Biophys J· July 2021

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Human type 1 and type 2 conventional dendritic cells express indoleamine 2,3-dioxygenase 1 with functional effects on T cell priming.
Simone P Sittig, Jasper J P van Beek, Georgina Flórez-Grau, Jorieke Weiden, Sonja I Buschow, Johannes Textor

Eur J Immunol· June 2021

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Use of directed acyclic graphs (DAGs) to identify confounders in applied health research: review and recommendations.
Peter W G Tennant, Eleanor J Murray, Kellyn F Arnold, Laurie Berrie, Matthew P Fox, Johannes Textor

Int J Epidemiol· May 2021

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A tipping point in cancer-immune dynamics leads to divergent immunotherapy responses and hampers biomarker discovery.
Jeroen H A Creemers, W Joost Lesterhuis, Niven Mehra, Winald R Gerritsen, Carl G Figdor, Johannes Textor

J Immunother Cancer· May 2021

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Immunophenotyping Reveals Longitudinal Changes in Circulating Immune Cells During Radium-223 Therapy in Patients With Metastatic Castration-Resistant Prostate Cancer.
Jeroen H A Creemers, Maarten J van der Doelen, Sandra van Wilpe, Rick Hermsen, Tjitske Duiveman-de Boer, Johannes Textor

Front Oncol· May 2021

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Artistoo, a library to build, share, and explore simulations of cells and tissues in the web browser.
Inge Mn Wortel, Johannes Textor

Elife· April 2021

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Testing Graphical Causal Models Using the R Package "dagitty".
Ankur Ankan, Inge M N Wortel, Johannes Textor

Curr Protoc· February 2021

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Reply to "Comment on 'Inverse Square Lévy Walks are not Optimal Search Strategies for d≥2"'.
Nicolas Levernier, Johannes Textor, Olivier Bénichou, Raphaël Voituriez

Phys Rev Lett· January 2021

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