Publications by authors named "John C Doyle"

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Diversity Deconstrains Component Limitations in Sensorimotor Control.
Yorie Nakahira, Quanying Liu, Xiyu Deng, Terrence J Sejnowski, John C Doyle

Neural Comput· September 2025

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Internal feedback in the cortical perception-action loop enables fast and accurate behavior.
Jing Shuang Li, Anish A Sarma, Terrence J Sejnowski, John C Doyle

Proc Natl Acad Sci U S A· September 2023

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Diversity-enabled sweet spots in layered architectures and speed-accuracy trade-offs in sensorimotor control.
Yorie Nakahira, Quanying Liu, Terrence J Sejnowski, John C Doyle

Proc Natl Acad Sci U S A· June 2021

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SBML Level 3: an extensible format for the exchange and reuse of biological models.
Sarah M Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, John C Doyle

Mol Syst Biol· August 2020

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Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community.
Tahmineh Khazaei, Rory L Williams, Said R Bogatyrev, John C Doyle, Christopher S Henry

Sci Adv· August 2020

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WheelCon: A Wheel Control-Based Gaming Platform for Studying Human Sensorimotor Control.
Quanying Liu, Yorie Nakahira, Zhichao Liang, Ahkeel Mohideen, Adam Dai, John C Doyle

J Vis Exp· August 2020

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Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks.
Noah Olsman, Ania-Ariadna Baetica, Fangzhou Xiao, Yoke Peng Leong, Richard M Murray, John C Doyle

Cell Syst· July 2019

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Architectural Principles for Characterizing the Performance of Antithetic Integral Feedback Networks.
Noah Olsman, Fangzhou Xiao, John C Doyle

iScience· April 2019

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Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings.
Anup Das, Aaron L Sampson, Claudia Lainscsek, Lyle Muller, Wutu Lin, John C Doyle

Neural Comput· March 2017

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Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution.
Vanessa D Jonsson, Collin M Blakely, Luping Lin, Saurabh Asthana, Nikolai Matni, John C Doyle

Sci Rep· March 2017

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Even Noisy Responses Can Be Perfect If Integrated Properly.
John C Doyle

Cell Syst· February 2016

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Robust efficiency and actuator saturation explain healthy heart rate control and variability.
Na Li, Jerry Cruz, Chenghao Simon Chien, Somayeh Sojoudi, Benjamin Recht, John C Doyle

Proc Natl Acad Sci U S A· August 2014

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Architecture, constraints, and behavior.
John C Doyle, Marie Csete

Proc Natl Acad Sci U S A· September 2011

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Glycolytic oscillations and limits on robust efficiency.
Fiona A Chandra, Gentian Buzi, John C Doyle

Science· July 2011

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Fire in the Earth system.
David M J S Bowman, Jennifer K Balch, Paulo Artaxo, William J Bond, Jean M Carlson, John C Doyle

Science· April 2009

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A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.
Jason W Bohland, Caizhi Wu, Helen Barbas, Hemant Bokil, Mihail Bota, John C Doyle

PLoS Comput Biol· March 2009

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Module-based analysis of robustness tradeoffs in the heat shock response system.
Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C Doyle

PLoS Comput Biol· July 2006

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The "robust yet fragile" nature of the Internet.
John C Doyle, David L Alderson, Lun Li, Steven Low, Matthew Roughan

Proc Natl Acad Sci U S A· October 2005

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Reverse engineering of biological complexity.
Marie E Csete, John C Doyle

Science· March 2002

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