Publications by authors named "John Calley"

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Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions.
Solveig K Sieberts, Thanneer M Perumal, Minerva M Carrasquillo, Mariet Allen, Joseph S Reddy, John Calley

Sci Data· October 2020

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Molecular dissection of CRC primary tumors and their matched liver metastases reveals critical role of immune microenvironment, EMT and angiogenesis in cancer metastasis.
Jiangang Liu, Yong Beom Cho, Hye Kyung Hong, Song Wu, Philip J Ebert, John N Calley

Sci Rep· July 2020

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RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs for discerning baseline expression exclusivity of candidate biomarkers.
Pierre R Bushel, Florian Caiment, Han Wu, Raegan O'Lone, Frank Day, John Calley

RNA Biol· May 2020

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Genomic characterization of intrinsic and acquired resistance to cetuximab in colorectal cancer patients.
Steven M Bray, Jeeyun Lee, Seung Tae Kim, Joon Young Hur, Philip J Ebert, John N Calley

Sci Rep· October 2019

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RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database.
Pierre R Bushel, Florian Caiment, Han Wu, Raegan O'Lone, Frank Day, John Calley

BMC Genomics· November 2018

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Elucidating the Impact of CHO Cell Culture Media on Tryptophan Oxidation of a Monoclonal Antibody Through Gene Expression Analyses.
Luhong He, Jairav X Desai, Jinxin Gao, Laurie B Hazeltine, Zhirui Lian, John N Calley

Biotechnol J· October 2018

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The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog.
Aaron Smith, John Calley, Sachin Mathur, Hui-Rong Qian, Han Wu

BMC Genomics· August 2016

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Genomic structure and expression of the human serotonin 2A receptor gene (HTR2A) locus: identification of novel HTR2A and antisense (HTR2A-AS1) exons.
Cara L Ruble, Ryan M Smith, John Calley, Leanne Munsie, David C Airey

BMC Genet· January 2016

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Paenibacillus lentus sp. nov., a β-mannanolytic bacterium isolated from mixed soil samples in a selective enrichment using guar gum as the sole carbon source.
Yong-Fu Li, John N Calley, Philip J Ebert, Emily Bulian Helmes

Int J Syst Evol Microbiol· April 2014

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An unbiased approach to identifying tau kinases that phosphorylate tau at sites associated with Alzheimer disease.
Annalisa Cavallini, Suzanne Brewerton, Amanda Bell, Samantha Sargent, Sarah Glover, John Calley

J Biol Chem· August 2013

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Genome-wide screen for modulation of hepatic apolipoprotein A-I (ApoA-I) secretion.
Rebecca R Miles, William Perry, Joseph V Haas, Marian K Mosior, Mathias N'Cho, John Calley

J Biol Chem· March 2013

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The acyl coenzymeA:monoacylglycerol acyltransferase 3 (MGAT3) gene is a pseudogene in mice but encodes a functional enzyme in rats.
Yong Gang Yue, Yan Qun Chen, Youyan Zhang, He Wang, Yue-Wei Qian, John N Calley

Lipids· June 2011

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Microarray probe mapping and annotation in cross-species comparative toxicogenomics.
John N Calley, William B Mattes, Timothy P Ryan

Methods Mol Biol· August 2008

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Assessment of diet-induced obese rats as an obesity model by comparative functional genomics.
Shuyu Li, Hong-Yan Zhang, Charlie C Hu, Frank Lawrence, Kelly E Gallagher, John N Calley

Obesity (Silver Spring)· April 2008

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Underlying mechanisms of pharmacology and toxicity of a novel PPAR agonist revealed using rodent and canine hepatocytes.
Yin Guo, Robert A Jolly, Bartley W Halstead, Thomas K Baker, John P Stutz, John N Calley

Toxicol Sci· April 2007

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A flexible integration and visualisation system for biomarker discovery.
Mary Gaylord, John Calley, Huahong Qiang, Eric W Su, Birong Liao

Appl Bioinformatics· February 2007

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Expression of Xenopus XlSALL4 during limb development and regeneration.
Anton W Neff, Michael W King, Mark W Harty, Trent Nguyen, John Calley

Dev Dyn· June 2005

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Identification of genes expressed during Xenopus laevis limb regeneration by using subtractive hybridization.
Michael W King, Trent Nguyen, John Calley, Mark W Harty, Michael C Muzinich

Dev Dyn· February 2003

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