Publications by authors named "John Chase"

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Sequencing by Expansion (SBX) - a novel, high-throughput single-molecule sequencing technology.
Mark Kokoris, Robert McRuer, Melud Nabavi, Aaron Jacobs, Marc Prindle, John Chase

bioRxiv· March 2025

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Context-specific synthetic T cell promoters from assembled transcriptional elements.
Jacob Appelbaum, Jia Wei, Rithun Mukherjee, Taylor Ishida, James Rosser, John Chase

Res Sq· October 2023

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Sleep Measurement Using Wrist-Worn Accelerometer Data Compared with Polysomnography.
John D Chase, Michael A Busa, John W Staudenmayer, John R Sirard

Sensors (Basel)· July 2022

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Prevalence of Field-Collected House Flies and Stable Flies With Bacteria Displaying Cefotaxime and Multidrug Resistance.
Matthew T Pileggi, John R Chase, Runhang Shu, Lin Teng, Kwangcheol C Jeong

J Med Entomol· March 2021

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Quadriceps Lipid Content Has Sex-Specific Associations With Whole-Muscle, Cellular, and Molecular Contractile Function in Older Adults.
Chad R Straight, Thomas B Voigt, Anudeep V Jala, John D Chase, Olivia R Ringham

J Gerontol A Biol Sci Med Sci· November 2019

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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, John Chase

Nat Biotechnol· September 2019

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, John Chase

Nat Biotechnol· August 2019

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Time of day, but not sleep restriction, affects markers of hemostasis following heavy exercise.
Paul A Roberson, John D Chase, Matthew B Bigman, Michael J Saunders, Nicholas D Luden

Appl Physiol Nutr Metab· February 2019

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An Introduction to Applied Bioinformatics: a free, open, and interactive text.
Evan Bolyen, Jai Ram Rideout, John Chase, T Anders Pitman, Arron Shiffer

J Open Source Educ· October 2018

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Structure/property comparisons of chemistries based on renewable 1,3-propanediol and petroleum-derived alkylene oxides.
Eric Lind, John Chase, Pat Mayer, Jed Riemer, Michael Anthonavage

J Cosmet Sci· April 2018

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One night of sleep restriction following heavy exercise impairs 3-km cycling time-trial performance in the morning.
John D Chase, Paul A Roberson, Michael J Saunders, Trent A Hargens, Christopher J Womack

Appl Physiol Nutr Metab· September 2017

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Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis.
Daniel Laubitz, Christy A Harrison, Monica T Midura-Kiela, Rajalakshmy Ramalingam, Claire B Larmonier, John H Chase

PLoS One· August 2016

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Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.
Jai Ram Rideout, John H Chase, Evan Bolyen, Gail Ackermann, Antonio González

Gigascience· June 2016

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Geography and Location Are the Primary Drivers of Office Microbiome Composition.
John Chase, Jennifer Fouquier, Mahnaz Zare, Derek L Sonderegger, Rob Knight

mSystems· April 2016

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Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
Jennifer Fouquier, Jai Ram Rideout, Evan Bolyen, John Chase, Arron Shiffer

Microbiome· February 2016

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cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies.
John H Chase, Evan Bolyen, Jai Ram Rideout, J Gregory Caporaso

mSystems· December 2015

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The Role of Curcumin in Modulating Colonic Microbiota During Colitis and Colon Cancer Prevention.
Rita-Marie T McFadden, Claire B Larmonier, Kareem W Shehab, Monica Midura-Kiela, Rajalakshmy Ramalingam, John H Chase

Inflamm Bowel Dis· November 2015

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Regions of homozygosity identified by oligonucleotide SNP arrays: evaluating the incidence and clinical utility.
Jia-Chi Wang, Leslie Ross, Loretta W Mahon, Renius Owen, Morteza Hemmat, John M Chase

Eur J Hum Genet· May 2015

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Temporal variability is a personalized feature of the human microbiome.
Gilberto E Flores, J Gregory Caporaso, Jessica B Henley, Jai Ram Rideout, Daniel Domogala, John Chase

Genome Biol· December 2014

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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.
Jai Ram Rideout, Yan He, Jose A Navas-Molina, William A Walters, Luke K Ursell, John Chase

PeerJ· September 2014

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Bacterial diversity in two Neonatal Intensive Care Units (NICUs).
Krissi M Hewitt, Frank L Mannino, Antonio Gonzalez, John H Chase, J Gregory Caporaso

PLoS One· July 2013

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Newborn screening for severe combined immunodeficiency does not identify bare lymphocyte syndrome.
Caroline Y Kuo, John Chase, Maria Garcia Lloret, E Richard Stiehm, Theodore Moore

J Allergy Clin Immunol· June 2013

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Acidomonas methanolica-associated necrotizing lymphadenitis in a patient with chronic granulomatous disease.
John M Chase, Steven M Holland, David E Greenberg, Kimberly Marshall-Batty, Adrian M Zelazny

J Clin Immunol· December 2012

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Comment on "Green Space, health inequality, and pregnancy".
Geoffrey H Donovan, Yvonne L Michael, David T Butry, Amy D Sullivan, John M Chase

Environ Int· February 2012

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Urban trees and the risk of poor birth outcomes.
Geoffrey H Donovan, Yvonne L Michael, David T Butry, Amy D Sullivan, John M Chase

Health Place· January 2011

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