Publications by authors named "John D Osborne"

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Advancing delirium detection through the Open Health Natural Language Processing Consortium and the Evolve to Next-Gen Accrual to Clinical Trials Network.
Sunyang Fu, Min Ji Kwak, Jaerong Ahn, Zhiyi Yue, Shreyas Ranganath, John D Osborne

J Gerontol A Biol Sci Med Sci· November 2025

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A Markov Chain Replacement Strategy for Surrogate Identifiers: Minimizing Re-Identification Risk While Preserving Text Reuse.
John D Osborne, Andrew Trotter, Tobias O'Leary, Chris Coffee, Micah D Cochran

Electronics (Basel)· October 2025

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Profile of Patients with Rheumatoid Arthritis-Associated Interstitial Lung Disease: A Single-Center Study.
Fatima K Alduraibi, James Haigney, Natalya Surmachevska, Dongmei Sun, John D Osborne

Eur J Rheumatol· August 2025

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Use of natural language processing to retrospectively identify and improve follow-up of adrenal incidentalomas based on patient and nodule characteristics.
Lillie Grace Veazey, Christopher Wu, Zhixing Song, Haleigh Negrete, Srini Tridandapani, John D Osborne

Am J Surg· April 2025

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Environment scan of generative AI infrastructure for clinical and translational science.
Betina Idnay, Zihan Xu, William G Adams, Mohammad Adibuzzaman, Nicholas R Anderson, John D Osborne

Npj Health Syst· January 2025

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Development and Validation of Natural Language Processing Algorithms in the ENACT National Electronic Health Record Research Network.
Yanshan Wang, Jordan Hilsman, Chenyu Li, Michele Morris, Paul M Heider, John D Osborne

medRxiv· January 2025

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A natural language processing-informed adrenal gland incidentaloma clinic improves guideline-based care.
C Corbin Frye, Ramsha Akhund, Mohammad Murcy, Lillie Grace Veazey, M Chandler McLeod, John D Osborne

World J Surg· December 2024

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Environment Scan of Generative AI Infrastructure for Clinical and Translational Science.
Betina Idnay, Zihan Xu, William G Adams, Mohammad Adibuzzaman, Nicholas R Anderson, John D Osborne

ArXiv· September 2024

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Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection.
Abdullateef I Almudaifer, Whitney Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, John D Osborne

J Biomed Semantics· June 2024

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Delirium Due to Potentially Avoidable Hospitalizations Among Older Adults.
Caroline Whittington, Rachel M Skains, Yue Zhang, John D Osborne, Tobias O'Leary

J Gerontol A Biol Sci Med Sci· March 2024

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Semantically oriented EHR navigation with a patient specific knowledge base and a clinical context ontology.
Tiago K Colicchio, John D Osborne, Clementino V Do Rosario, Ankit Anand, Nicholas A Timkovich

AMIA Annu Symp Proc· January 2024

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Annotation of Opioid Use Disorder Entity Modifiers in Clinical Text.
Abdullateef I Almudaifer, Sue S Feldman, Tobias O'Leary, Whitney L Covington, JaMor Hairston, John D Osborne

Stud Health Technol Inform· January 2024

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An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, John D Osborne

J Am Med Inform Assoc· November 2023

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Development and Validation of an Emergency Department Electronic Medical Record Gout Flare Alert.
Lesley E Jackson, Narender Annapureddy, Megan E Hansen, Kenneth G Saag, James Booth, John D Osborne

Arthritis Care Res (Hoboken)· August 2023

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Hospital-associated disability due to avoidable hospitalizations among older adults.
Rachel M Skains, Yue Zhang, John D Osborne, Tobias O'Leary, Mackenzie E Fowler

J Am Geriatr Soc· May 2023

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Delirium Mediates Incidence of Hospital-Associated Disability Among Older Adults.
Hyun Freeman, Roy C Martin, Caroline Whittington, Yue Zhang, John D Osborne

J Am Med Dir Assoc· April 2023

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Identification of Gout Flares in Chief Complaint Text Using Natural Language Processing.
John D Osborne, James S Booth, Tobias O'Leary, Amy Mudano, Giovanna Rosas

AMIA Annu Symp Proc· June 2021

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AllergyMap: An Open Source Corpus of Allergy Mention Normalizations.
Amy Y Wang, John D Osborne, Maria I Danila, Andrew M Naidech, David M Liebovitz

AMIA Annu Symp Proc· June 2021

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Phenotype Detection Registry System (PheDRS) - Implementation of a Generalizable Single Institution Clinical Registry Architecture.
John D Osborne, Adarsh Khare, Donald M Dempsey, J Michael Wells, Matt Wyatt

AMIA Annu Symp Proc· December 2019

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CUILESS2016: a clinical corpus applying compositional normalization of text mentions.
John D Osborne, Matthew B Neu, Maria I Danila, Thamar Solorio, Steven J Bethard

J Biomed Semantics· January 2018

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Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learning.
John D Osborne, Matthew Wyatt, Andrew O Westfall, James Willig, Steven Bethard

J Am Med Inform Assoc· November 2016

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Reduction of hydrogen peroxide accumulation and toxicity by a catalase from Mycoplasma iowae.
Rachel E Pritchard, Alexandre J Prassinos, John D Osborne, Ziv Raviv, Mitchell F Balish

PLoS One· December 2015

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Comparative genome analysis of Mycoplasma pneumoniae.
Li Xiao, Travis Ptacek, John D Osborne, Donna M Crabb, Warren L Simmons

BMC Genomics· August 2015

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Draft Genome Sequence of Hymenobacter sp. Strain IS2118, Isolated from a Freshwater Lake in Schirmacher Oasis, Antarctica, Reveals Diverse Genes for Adaptation to Cold Ecosystems.
Hyunmin Koo, Travis Ptacek, Michael Crowley, Ashit K Swain, John D Osborne

Genome Announc· August 2014

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Type 1 and type 2 strains of Mycoplasma pneumoniae form different biofilms.
Warren L Simmons, James M Daubenspeck, John D Osborne, Mitchell F Balish, Ken B Waites

Microbiology (Reading)· April 2013

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