Publications by authors named "John Didion"

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Population structure and inbreeding in wild house mice (Mus musculus) at different geographic scales.
Andrew P Morgan, Jonathan J Hughes, John P Didion, Wesley J Jolley, Karl J Campbell

Heredity (Edinb)· September 2022

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Genetic effects on liver chromatin accessibility identify disease regulatory variants.
Kevin W Currin, Michael R Erdos, Narisu Narisu, Vivek Rai, Swarooparani Vadlamudi, John P Didion

Am J Hum Genet· July 2021

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Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures.
Vivek Rai, Daniel X Quang, Michael R Erdos, Darren A Cusanovich, Riza M Daza, John P Didion

Mol Metab· February 2020

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Analysis of somatic mutations identifies signs of selection during in vitro aging of primary dermal fibroblasts.
Narisu Narisu, Rebecca Rothwell, Peter Vrtačnik, Sofía Rodríguez, John Didion

Aging Cell· December 2019

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Integrative analysis of gene expression, DNA methylation, physiological traits, and genetic variation in human skeletal muscle.
D Leland Taylor, Anne U Jackson, Narisu Narisu, Gibran Hemani, Michael R Erdos, John P Didion

Proc Natl Acad Sci U S A· May 2019

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BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.
Luli S Zou, Michael R Erdos, D Leland Taylor, Peter S Chines, Arushi Varshney, John P Didion

BMC Genomics· May 2018

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Atropos: specific, sensitive, and speedy trimming of sequencing reads.
John P Didion, Marcel Martin, Francis S Collins

PeerJ· August 2017

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Genetic regulatory signatures underlying islet gene expression and type 2 diabetes.
Arushi Varshney, Laura J Scott, Ryan P Welch, Michael R Erdos, Peter S Chines, John P Didion

Proc Natl Acad Sci U S A· February 2017

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Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers.
Andrew P Morgan, John P Didion, Anthony G Doran, James M Holt, Leonard McMillan

G3 (Bethesda)· December 2016

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The Evolutionary Fates of a Large Segmental Duplication in Mouse.
Andrew P Morgan, J Matthew Holt, Rachel C McMullan, Timothy A Bell, Amelia M-F Clayshulte, John P Didion

Genetics· September 2016

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R2d2 Drives Selfish Sweeps in the House Mouse.
John P Didion, Andrew P Morgan, Liran Yadgary, Timothy A Bell, Rachel C McMullan

Mol Biol Evol· June 2016

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The genetic regulatory signature of type 2 diabetes in human skeletal muscle.
Laura J Scott, Michael R Erdos, Jeroen R Huyghe, Ryan P Welch, Andrew T Beck, John P Didion

Nat Commun· June 2016

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The Mouse Universal Genotyping Array: From Substrains to Subspecies.
Andrew P Morgan, Chen-Ping Fu, Chia-Yu Kao, Catherine E Welsh, John P Didion

G3 (Bethesda)· December 2015

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Corrigendum: analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance.
James J Crowley, Vasyl Zhabotynsky, Wei Sun, Shunping Huang, Isa Kemal Pakatci, John P Didion

Nat Genet· June 2015

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Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance.
James J Crowley, Vasyl Zhabotynsky, Wei Sun, Shunping Huang, Isa Kemal Pakatci, John P Didion

Nat Genet· April 2015

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A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.
John P Didion, Andrew P Morgan, Amelia M-F Clayshulte, Rachel C Mcmullan, Liran Yadgary

PLoS Genet· February 2015

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Coexistent ARID1A-PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling.
Ronald L Chandler, Jeffrey S Damrauer, Jesse R Raab, Jonathan C Schisler, Matthew D Wilkerson, John P Didion

Nat Commun· January 2015

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SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy.
John P Didion, Ryan J Buus, Zohreh Naghashfar, David W Threadgill, Herbert C Morse

BMC Genomics· October 2014

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Genetic architecture of skewed X inactivation in the laboratory mouse.
John D Calaway, Alan B Lenarcic, John P Didion, Jeremy R Wang, Jeremy B Searle

PLoS Genet· March 2014

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Deconstructing Mus gemischus: advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse.
John P Didion, Fernando Pardo-Manuel de Villena

Mamm Genome· February 2013

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Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias.
John P Didion, Hyuna Yang, Keith Sheppard, Chen-Ping Fu, Leonard McMillan

BMC Genomics· January 2012

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Genetic analysis of complex traits in the emerging Collaborative Cross.
David L Aylor, William Valdar, Wendy Foulds-Mathes, Ryan J Buus, Ricardo A Verdugo, John D Didion

Genome Res· August 2011

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Subspecific origin and haplotype diversity in the laboratory mouse.
Hyuna Yang, Jeremy R Wang, John P Didion, Ryan J Buus, Timothy A Bell

Nat Genet· May 2011

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The 23rd International Mammalian Genome Conference meeting report.
Amy F Eisener-Dorman, John P Didion, Cristina Santos, John D Calaway

Mamm Genome· June 2010

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Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring.
Vinzenz Lange, Johan A Malmström, John Didion, Nichole L King, Björn P Johansson

Mol Cell Proteomics· August 2008

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