Publications by authors named "John P Cunningham"

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Bridging the Gap Between Platforms: Comparing Grape Phylloxera (Fitch) Microsatellite Allele Size and DNA Sequence Variation.
Mark J Blacket, Alexander M Piper, Ary A Hoffmann, John Paul Cunningham, Isabel Valenzuela

Insects· February 2025

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Establishing the distribution of Carpophilus truncatus in Australia using an integrative approach for an emerging global pest.
Stephen James Tobin, John Paul Cunningham

Sci Rep· August 2024

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Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools.
Dan Biderman, Matthew R Whiteway, Cole Hurwitz, Nicholas Greenspan, Robert S Lee, John P Cunningham

Nat Methods· July 2024

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Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools.
Dan Biderman, Matthew R Whiteway, Cole Hurwitz, Nicholas Greenspan, Robert S Lee, John P Cunningham

bioRxiv· April 2024

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Almanac - Retrieval-Augmented Language Models for Clinical Medicine.
Cyril Zakka, Rohan Shad, Akash Chaurasia, Alex R Dalal, Jennifer L Kim, John Patrick Cunningham

NEJM AI· February 2024

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Identifying Interpretable Latent Factors with Sparse Component Analysis.
Andrew J Zimnik, K Cora Ames, Xinyue An, Laura Driscoll, Antonio H Lara, John P Cunningham

bioRxiv· February 2024

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Metarhizium spp. isolates effective against Queensland fruit fly juvenile life stages in soil.
Madita Prince, Aimee C McKinnon, Diana Leemon, Tim Sawbridge, John Paul Cunningham

PLoS One· January 2024

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The pest sap beetle Carpophilus (Myothorax) truncatus Murray, 1864 (Coleoptera: Nitidulidae)-a new synonymy and a related new species of Carpophilus.
Linda Semeraro, Mark J Blacket, Lea Rako, John Paul Cunningham

Zootaxa· June 2023

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Volatiles produced by symbiotic yeasts improve trap catches of Carpophilus davidsoni (Coleoptera: Nitidulidae): an important pest of stone fruits in Australia.
Farrukh Baig, Kevin Farnier, Muhammad Ishtiaq, John Paul Cunningham

J Econ Entomol· April 2023

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Seasonal Phenology and Climate Associated Feeding Activity of Introduced in Southeast Australia.
Duncan D Jaroslow, John P Cunningham, David I Smith, Martin J Steinbauer

Insects· March 2023

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A Synthetic Blend of Fruit and Live Yeast Odours Shows Promise for Trapping Mated Female Queensland Fruit Fly, Bactrocera tryoni, in the Field.
Jessica Henneken, Kevin Farnier, John Paul Cunningham

J Chem Ecol· December 2022

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Flexible neural control of motor units.
Najja J Marshall, Joshua I Glaser, Eric M Trautmann, Elom A Amematsro, Sean M Perkins, John P Cunningham

Nat Neurosci· November 2022

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Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis.
Taiga Abe, Ian Kinsella, Shreya Saxena, E Kelly Buchanan, Joao Couto, John P Cunningham

Neuron· September 2022

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Learning sparse log-ratios for high-throughput sequencing data.
Elliott Gordon-Rodriguez, Thomas P Quinn, John P Cunningham

Bioinformatics· December 2021

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Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders.
Matthew R Whiteway, Dan Biderman, Yoni Friedman, Mario Dipoppa, E Kelly Buchanan, John P Cunningham

PLoS Comput Biol· September 2021

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Predicting post-operative right ventricular failure using video-based deep learning.
Rohan Shad, Nicolas Quach, Robyn Fong, Patpilai Kasinpila, Cayley Bowles, John P Cunningham

Nat Commun· August 2021

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Chronic, cortex-wide imaging of specific cell populations during behavior.
Joao Couto, Simon Musall, Xiaonan R Sun, Anup Khanal, Steven Gluf, John P Cunningham

Nat Protoc· July 2021

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Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches.
Jana Batovska, Alexander M Piper, Isabel Valenzuela, John Paul Cunningham, Mark J Blacket

Sci Rep· April 2021

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Yeasts Influence Host Selection and Larval Fitness in Two Frugivorous Carpophilus Beetle Species.
Farrukh Baig, Kevin Farnier, Alexander M Piper, Robert Speight, John Paul Cunningham

J Chem Ecol· August 2020

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Neural Trajectories in the Supplementary Motor Area and Motor Cortex Exhibit Distinct Geometries, Compatible with Different Classes of Computation.
Abigail A Russo, Ramin Khajeh, Sean R Bittner, Sean M Perkins, John P Cunningham

Neuron· August 2020

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Value and choice as separable and stable representations in orbitofrontal cortex.
Daniel L Kimmel, Gamaleldin F Elsayed, John P Cunningham, William T Newsome

Nat Commun· July 2020

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Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning.
Farzaneh Najafi, Gamaleldin F Elsayed, Robin Cao, Eftychios Pnevmatikakis, Peter E Latham, John P Cunningham

Neuron· January 2020

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Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance.
Alexander M Piper, Jana Batovska, Noel O I Cogan, John Weiss, John Paul Cunningham

Gigascience· August 2019

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Towards the neural population doctrine.
Shreya Saxena, John P Cunningham

Curr Opin Neurobiol· April 2019

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Conservation of preparatory neural events in monkey motor cortex regardless of how movement is initiated.
Antonio H Lara, Gamaleldin F Elsayed, Andrew J Zimnik, John P Cunningham, Mark M Churchland

Elife· August 2018

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