Publications by authors named "John Reif"

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Neural CRNs: A Natural Implementation of Learning in Chemical Reaction Networks.
Rajiv Teja Nagipogu, John H Reif

ACS Synth Biol· October 2025

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Evaluating Bias in Self-Reported Symptoms During a Cyanobacterial Algal Bloom.
John S Reif, Rebecca Koszalinski, Malcolm M McFarland, Michael L Parsons, Rachael Schinbeckler

Toxins (Basel)· June 2025

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A biomimetic branching signal-passing tile assembly model with dynamic growth and disassembly.
Daniel Fu, John Reif

J R Soc Interface· August 2024

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Symptom frequency and exposure to a cyanobacteria bloom in Florida.
John S Reif, Nicole Stockley, Kathi Harvey, Malcolm McFarland, Shirley C Gordon

Harmful Algae· November 2023

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A survey on molecular-scale learning systems with relevance to DNA computing.
Rajiv Teja Nagipogu, Daniel Fu, John H Reif

Nanoscale· May 2023

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Automated design of 3D DNA origami with non-rasterized 2D curvature.
Daniel Fu, Raghu Pradeep Narayanan, Abhay Prasad, Fei Zhang, Dewight Williams, John Reif

Sci Adv· December 2022

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A lyophilized colorimetric RT-LAMP test kit for rapid, low-cost, at-home molecular testing of SARS-CoV-2 and other pathogens.
Xin Song, Felicity J Coulter, Ming Yang, Jessica L Smith, Fikadu G Tafesse, John H Reif

Sci Rep· April 2022

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Comparative Innate and Adaptive Immune Responses in Atlantic Bottlenose Dolphins () With Viral, Bacterial, and Fungal Infections.
Gregory D Bossart, Tracy A Romano, Margie M Peden-Adams, Adam M Schaefer, Charles D Rice, John S Reif

Front Immunol· July 2020

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Using Strand Displacing Polymerase To Program Chemical Reaction Networks.
Shalin Shah, Jasmine Wee, Tianqi Song, Luis Ceze, Karin Strauss, John Reif

J Am Chem Soc· May 2020

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Exposure to microcystin among coastal residents during a cyanobacteria bloom in Florida.
Adam M Schaefer, Luke Yrastorza, Nicole Stockley, Kathi Harvey, Nancy Harris, John S Reif

Harmful Algae· February 2020

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Seasonal distributions and other risk factors for Giardia duodenalis and Cryptosporidium spp. infections in dogs and cats in Chiang Mai, Thailand.
Sahatchai Tangtrongsup, A Valeria Scorza, John S Reif, Lora R Ballweber, Michael R Lappin

Prev Vet Med· January 2020

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Mercury Exposure, Fish Consumption, and Perceived Risk among Pregnant Women in Coastal Florida.
Adam M Schaefer, Matthew Zoffer, Luke Yrastorza, Daniel M Pearlman, Gregory D Bossart, John S Reif

Int J Environ Res Public Health· December 2019

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Fast and compact DNA logic circuits based on single-stranded gates using strand-displacing polymerase.
Tianqi Song, Abeer Eshra, Shalin Shah, Hieu Bui, Daniel Fu, John Reif

Nat Nanotechnol· November 2019

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Programming DNA-Based Biomolecular Reaction Networks on Cancer Cell Membranes.
Tianqi Song, Shalin Shah, Hieu Bui, Sudhanshu Garg, Abeer Eshra, John Reif

J Am Chem Soc· October 2019

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Nucleic Acid Databases and Molecular-Scale Computing.
Xin Song, John Reif

ACS Nano· June 2019

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Improved Optical Multiplexing with Temporal DNA Barcodes.
Shalin Shah, Abhishek K Dubey, John Reif

ACS Synth Biol· May 2019

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Genomic characterization of a novel pegivirus species from free-ranging bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon, Florida.
Thaís C S Rodrigues, Kuttichantran Subramaniam, Stephen D McCulloch, Juli D Goldstein, Adam M Schaefer, John S Reif

Virus Res· April 2019

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Programming Temporal DNA Barcodes for Single-Molecule Fingerprinting.
Shalin Shah, Abhishek K Dubey, John Reif

Nano Lett· April 2019

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Genomic sequencing of a virus representing a novel type within the species Dyopipapillomavirus 1 in an Indian River Lagoon bottlenose dolphin.
Galaxia Cortés-Hinojosa, Kuttichantran Subramaniam, James F X Wellehan, Terry Fei Fan Ng, Eric Delwart, John S Reif

Arch Virol· March 2019

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DNA-Based Analog Computing.
Daniel Fu, Shalin Shah, Tianqi Song, John Reif

Methods Mol Biol· February 2019

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Improving the Performance of DNA Strand Displacement Circuits by Shadow Cancellation.
Tianqi Song, Nikhil Gopalkrishnan, Abeer Eshra, Sudhanshu Garg, Reem Mokhtar, John Reif

ACS Nano· November 2018

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Renewable Time-Responsive DNA Circuits.
Sudhanshu Garg, Shalin Shah, Hieu Bui, Tianqi Song, Reem Mokhtar, John Reif

Small· July 2018

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Complete Genome Sequencing of a Novel Type of in Indian River Lagoon Bottlenose Dolphins (Tursiops truncatus).
Thaís C S Rodrigues, Kuttichantran Subramaniam, Galaxia Cortés-Hinojosa, James F X Wellehan, Terry Fei Fan Ng, John S Reif

Genome Announc· April 2018

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Localized DNA Hybridization Chain Reactions on DNA Origami.
Hieu Bui, Shalin Shah, Reem Mokhtar, Tianqi Song, Sudhanshu Garg, John Reif

ACS Nano· February 2018

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Design and Analysis of Compact DNA Strand Displacement Circuits for Analog Computation Using Autocatalytic Amplifiers.
Tianqi Song, Sudhanshu Garg, Reem Mokhtar, Hieu Bui, John Reif

ACS Synth Biol· January 2018

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