Publications by authors named "John Rinn"

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regulates effector-to-memory CD8 T cell differentiation during infection in vivo.
Julia Erber, Carmen Stecher, Valerie Plajer, Nina Braun, William Mallard, John L Rinn

Proc Natl Acad Sci U S A· December 2025

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Widespread specific intron retention events in nuclear RNA complexes identified by sedimentation analysis of pluripotent cellular extracts.
Isabela T Pereira, Izabela Mamede, Paulo P Amaral, Gloria R Franco, John L Rinn

Genome Res· October 2025

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X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes.
Tim P Hasenbein, Sarah Hoelzl, Zachary D Smith, Chiara Gerhardinger, Marion O C Gonner, John L Rinn

Nat Commun· December 2024

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Biophysical characterization of high-confidence, small human proteins.
A M Whited, Irwin Jungreis, Jeffre Allen, Christina L Cleveland, Jonathan M Mudge, John L Rinn

Biophys Rep (N Y)· September 2024

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The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation.
Christian Much, Erika L Lasda, Isabela T Pereira, Tenaya K Vallery, Daniel Ramirez, John L Rinn

Nat Commun· August 2024

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Massively parallel dissection of RNA in RNA-protein interactions in vivo.
Yu Hsuan Lee, Evan P Hass, Will Campodonico, Yong Kyu Lee, Erika Lasda, John L Rinn

Nucleic Acids Res· June 2024

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Evaluation of the RNA-dependence of PRC2 binding to chromatin in human pluripotent stem cells.
Yicheng Long, Taeyoung Hwang, Anne R Gooding, Karen J Goodrich, Skylar D Hanson, John L Rinn

bioRxiv· May 2024

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Biophysical characterization of high-confidence, small human proteins.
A M Whited, Irwin Jungreis, Jeffre Allen, Christina L Cleveland, Jonathan M Mudge, John L Rinn

bioRxiv· April 2024

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High-throughput functional analysis of regulatory variants using a massively parallel reporter assay.
Kate Delfosse, Chiara Gerhardinger, John L Rinn, Philipp G Maass

STAR Protoc· December 2023

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Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses.
Erica Normandin, Sergio Triana, Siddharth S Raju, Tammy C T Lan, Kim Lagerborg, John L Rinn

Cell Genom· December 2023

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Long non-coding RNAs: definitions, functions, challenges and recommendations.
John S Mattick, Paulo P Amaral, Piero Carninci, Susan Carpenter, Howard Y Chang, John L Rinn

Nat Rev Mol Cell Biol· June 2023

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Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques.
Luisa Santus, Maria Sopena-Rios, Raquel García-Pérez, Aaron E Lin, Gordon C Adams, John L Rinn

Nat Commun· June 2023

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DNMT1 inhibition by pUG-fold quadruplex RNA.
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, John L Rinn

RNA· March 2023

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is a transiently expressed non-coding RNA essential for human endoderm formation.
Alexandro Landshammer, Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, John L Rinn

Elife· January 2023

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Editorial overview: The genome in space-time.
Jeanne Lawrence, John L Rinn

Curr Opin Genet Dev· October 2022

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Prolonged FOS activity disrupts a global myogenic transcriptional program by altering 3D chromatin architecture in primary muscle progenitor cells.
A Rasim Barutcu, Gabriel Elizalde, Alfredo E Gonzalez, Kartik Soni, John L Rinn

Skelet Muscle· August 2022

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Evolutionary divergence of localization and expression.
Christian Much, Michael J Smallegan, Taeyoung Hwang, Skylar D Hanson, Gabrijela Dumbović, John L Rinn

RNA· June 2022

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Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Nature· May 2022

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From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo.
Daniel Andergassen, John L Rinn

Nat Rev Genet· April 2022

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Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo.
Thomas A Carter, Manvendra Singh, Gabrijela Dumbović, Jason D Chobirko, John L Rinn

Elife· February 2022

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Genome-wide CRISPR interference screen identifies long non-coding RNA loci required for differentiation and pluripotency.
Jeffrey R Haswell, Kaia Mattioli, Chiara Gerhardinger, Philipp G Maass, Daniel J Foster, John L Rinn

PLoS One· December 2021

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Noncoding RNAs: biology and applications-a Keystone Symposia report.
Jennifer Cable, Edith Heard, Tetsuro Hirose, Kannanganattu V Prasanth, Ling-Ling Chen, John L Rinn

Ann N Y Acad Sci· December 2021

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Genome-wide binding analysis of 195 DNA binding proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation.
Michael J Smallegan, Soraya Shehata, Savannah F Spradlin, Alison Swearingen, Graycen Wheeler, John L Rinn

PLoS One· November 2021

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Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages.
Daniel Andergassen, Zachary D Smith, Helene Kretzmer, John L Rinn, Alexander Meissner

Dev Cell· November 2021

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Publisher Correction: Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention.
Gabrijela Dumbović, Ulrich Braunschweig, Heera K Langner, Michael Smallegan, Josep Biayna, John L Rinn

Nat Commun· October 2021

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