Publications by authors named "Jonas Demeulemeester"

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Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes.
Stefan C Dentro, Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G Deshwar, Kaixian Yu, Yulia Rubanova, Geoff Macintyre, Jonas Demeulemeester

Cell· April 2021

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ctDNA detectability and representativeness in seven body liquids from patients with metastatic breast cancer.
François Richard, Marion Maetens, Karen Van Baelen, Kristien Borremans, Josephine Van Cauwenberge, Jonas Demeulemeester

Nat Commun· December 2025

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Optical Genome Mapping Is a Powerful Diagnostic Tool in Non-Hodgkin Lymphoma.
Amber Verhasselt, Geneviève Ameye, Justine Vanhevel, Thomas Tousseyn, Johanna Vets, Jonas Demeulemeester

Mod Pathol· December 2025

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Single-cell mapping of alternative splicing linked to checkpoint immunotherapy response.
Jieyi Xiong, Orian Bricard, Ingrid Arijs, Jonas Demeulemeester, Chen Gu

Nucleic Acids Res· November 2025

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Profiling the genomic landscape and evolutionary history of polyploid giant cancer cells in undifferentiated pleomorphic sarcomas.
Amy L Bowes, Sara Waise, Tom Lesluyes, Thomas Butters, Christie English, Jonas Demeulemeester

Cancer Lett· November 2025

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DNA methylation cooperates with genomic alterations during non-small cell lung cancer evolution.
Francisco Gimeno-Valiente, Carla Castignani, Elizabeth Larose Cadieux, Nana E Mensah, Xiaohong Liu, Jonas Demeulemeester

Nat Genet· September 2025

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Emerging insights into mosaic errors of immunity.
Willem Roosens, Jonas Demeulemeester, Eric Legius, Sinisa Savic, Rik Schrijvers

Trends Immunol· September 2025

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Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data.
Jakub Idkowiak, Jonas Dehairs, Jana Schwarzerová, Dominika Olešová, Jacob X M Truong, Jonas Demeulemeester

Nat Commun· September 2025

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Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction.
Adriana Salcedo, Maxime Tarabichi, Alex Buchanan, Shadrielle M G Espiritu, Hongjiu Zhang, Jonas Demeulemeester

Nat Biotechnol· April 2025

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Single-cell genome and transcriptome sequencing without upfront whole-genome amplification reveals cell state plasticity of melanoma subclones.
Koen Theunis, Sebastiaan Vanuytven, Irene Claes, Jarne Geurts, Florian Rambow, Jonas Demeulemeester

Nucleic Acids Res· March 2025

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Focal deletions of a promoter tether activate the IRX3 oncogene in T-cell acute lymphoblastic leukemia.
Sunniyat Rahman, Gianna Bloye, Nadine Farah, Jonas Demeulemeester, Joana R Costa

Blood· November 2024

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Single-cell somatic copy number variants in brain using different amplification methods and reference genomes.
Ester Kalef-Ezra, Zeliha Gozde Turan, Diego Perez-Rodriguez, Ida Bomann, Sairam Behera, Jonas Demeulemeester

Commun Biol· October 2024

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Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation.
Carmen Bravo González-Blas, Irina Matetovici, Hanne Hillen, Ibrahim Ihsan Taskiran, Roel Vandepoel, Jonas Demeulemeester

Nat Cell Biol· January 2024

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Single-cell somatic copy number variants in brain using different amplification methods and reference genomes.
Ester Kalef-Ezra, Zeliha Gozde Turan, Diego Perez-Rodriguez, Ida Bomann, Sairam Behera, Jonas Demeulemeester

bioRxiv· November 2023

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Somatic evolution of marine transmissible leukemias in the common cockle, Cerastoderma edule.
Alicia L Bruzos, Martín Santamarina, Daniel García-Souto, Seila Díaz, Sara Rocha, Jonas Demeulemeester

Nat Cancer· November 2023

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System-wide mapping of peptide-GPCR interactions in C. elegans.
Isabel Beets, Sven Zels, Elke Vandewyer, Jonas Demeulemeester, Jelle Caers

Cell Rep· September 2023

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The Clinicogenomic Landscape of Induction Failure in Childhood and Young Adult T-Cell Acute Lymphoblastic Leukemia.
David O'Connor, Jonas Demeulemeester, Lucia Conde, Amy Kirkwood, Kent Fung

J Clin Oncol· July 2023

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Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester

Nat Genet· June 2023

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Evolutionary characterization of lung adenocarcinoma morphology in TRACERx.
Takahiro Karasaki, David A Moore, Selvaraju Veeriah, Cristina Naceur-Lombardelli, Antonia Toncheva, Jonas Demeulemeester

Nat Med· April 2023

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Genomic-transcriptomic evolution in lung cancer and metastasis.
Carlos Martínez-Ruiz, James R M Black, Clare Puttick, Mark S Hill, Jonas Demeulemeester

Nature· April 2023

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Author Correction: The evolutionary history of 2,658 cancers.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C Dentro, Santiago Gonzalez, Jonas Demeulemeester

Nature· February 2023

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Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression.
Shaolong Cao, Jennifer R Wang, Shuangxi Ji, Peng Yang, Yaoyi Dai, Jonas Demeulemeester

Nat Biotechnol· November 2022

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Primary mediastinal large B-cell lymphoma is characterized by large-scale copy-neutral loss of heterozygosity.
Stefania Tuveri, Koen Debackere, Lukas Marcelis, Nicolas Dierckxsens, Jonas Demeulemeester

Genes Chromosomes Cancer· October 2022

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Biallelic mutations in cancer genomes reveal local mutational determinants.
Jonas Demeulemeester, Stefan C Dentro, Moritz Gerstung, Peter Van Loo

Nat Genet· February 2022

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Analysis of long and short enhancers in melanoma cell states.
David Mauduit, Ibrahim Ihsan Taskiran, Liesbeth Minnoye, Maxime de Waegeneer, Valerie Christiaens, Jonas Demeulemeester

Elife· December 2021

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Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture.
Eva G Álvarez, Jonas Demeulemeester, Paula Otero, Clemency Jolly, Daniel García-Souto

Nat Commun· November 2021

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