Publications by authors named "Jonathan A Atkinson"

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pyRootHair: Machine Learning Accelerated Software for High-Throughput Phenotyping of Plant Root Hair Traits.
Ian Tsang, Lawrence Percival-Alwyn, Stephen Rawsthorne, James Cockram, Fiona Leigh, Jonathan A Atkinson

Gigascience· November 2025

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Microbial drivers of root plasticity.
Francisco Dini-Andreote, Darren M Wells, Jonathan A Atkinson, Brian S Atkinson, Omri M Finkel

New Phytol· October 2025

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High-fidelity wheat plant reconstruction using 3D Gaussian splatting and neural radiance fields.
Lewis A G Stuart, Darren M Wells, Jonathan A Atkinson, Simon Castle-Green, Jack Walker

Gigascience· January 2025

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A novel root hair mutant, , affects root hair elongation and reactive oxygen species levels in wheat.
Ian Tsang, Pauline Thomelin, Eric S Ober, Stephen Rawsthorne, Jonathan A Atkinson

Front Plant Sci· October 2024

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Root hairs: an underexplored target for sustainable cereal crop production.
Ian Tsang, Jonathan A Atkinson, Stephen Rawsthorne, James Cockram, Fiona Leigh

J Exp Bot· September 2024

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Glutaredoxin regulation of primary root growth is associated with early drought stress tolerance in pearl millet.
Carla de la Fuente, Alexandre Grondin, Bassirou Sine, Marilyne Debieu, Christophe Belin, Jonathan A Atkinson

Elife· January 2024

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Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice.
Jordan K Robson, John N Ferguson, Lorna McAusland, Jonathan A Atkinson, Christine Tranchant-Dubreuil

J Exp Bot· September 2023

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Loss of ancestral function in duckweed roots is accompanied by progressive anatomical reduction and a re-distribution of nutrient transporters.
Alexander Ware, Dylan H Jones, Paulina Flis, Elina Chrysanthou, Kellie E Smith, Jonathan A Atkinson

Curr Biol· May 2023

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Dual expression and anatomy lines allow simultaneous visualization of gene expression and anatomy.
Britta M C Kümpers, Jingyi Han, John Vaughan-Hirsch, Nicholas Redman, Alexander Ware, Jonathan A Atkinson

Plant Physiol· January 2022

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Non-invasive Imaging of Rice Roots in Non-compacted and Compacted Soil.
Bipin K Pandey, Jonathan A Atkinson, Craig J Sturrock

Bio Protoc· December 2021

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Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation.
Paul B L George, David B Fidler, Joy D Van Nostrand, Jonathan A Atkinson, Sacha J Mooney

Front Microbiol· September 2021

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The interaction between wheat roots and soil pores in structured field soil.
Hu Zhou, William R Whalley, Malcolm J Hawkesford, Rhys W Ashton, Brian Atkinson, Jonathan A Atkinson

J Exp Bot· February 2021

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Low-Cost Automated Vectors and Modular Environmental Sensors for Plant Phenotyping.
Stuart A Bagley, Jonathan A Atkinson, Henry Hunt, Michael H Wilson, Tony P Pridmore

Sensors (Basel)· June 2020

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Soil strength influences wheat root interactions with soil macropores.
Jonathan A Atkinson, Malcolm J Hawkesford, William R Whalley, Hu Zhou, Sacha J Mooney

Plant Cell Environ· January 2020

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RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures.
Robail Yasrab, Jonathan A Atkinson, Darren M Wells, Andrew P French, Tony P Pridmore

Gigascience· November 2019

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High throughput procedure utilising chlorophyll fluorescence imaging to phenotype dynamic photosynthesis and photoprotection in leaves under controlled gaseous conditions.
Lorna McAusland, Jonathan A Atkinson, Tracy Lawson, Erik H Murchie

Plant Methods· September 2019

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Demystifying roots: A need for clarification and extended concepts in root phenotyping.
Guillaume Lobet, Ana Paez-Garcia, Hannah Schneider, Astrid Junker, Jonathan A Atkinson

Plant Sci· May 2019

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Uncovering the hidden half of plants using new advances in root phenotyping.
Jonathan A Atkinson, Michael P Pound, Malcolm J Bennett, Darren M Wells

Curr Opin Biotechnol· February 2019

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Erratum to: Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.
Michael P Pound, Jonathan A Atkinson, Alexandra J Townsend, Michael H Wilson, Marcus Griffiths

Gigascience· July 2018

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Erratum to: Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.
Jonathan A Atkinson, Guillaume Lobet, Manuel Noll, Patrick E Meyer, Marcus Griffiths

Gigascience· July 2018

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Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.
Michael P Pound, Jonathan A Atkinson, Alexandra J Townsend, Michael H Wilson, Marcus Griffiths

Gigascience· October 2017

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Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.
Jonathan A Atkinson, Guillaume Lobet, Manuel Noll, Patrick E Meyer, Marcus Griffiths

Gigascience· October 2017

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An Updated Protocol for High Throughput Plant Tissue Sectioning.
Jonathan A Atkinson, Darren M Wells

Front Plant Sci· October 2017

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Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency.
Kim Kenobi, Jonathan A Atkinson, Darren M Wells, Oorbessy Gaju, Jayalath G De Silva

J Exp Bot· October 2017

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Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots.
Sixtine Passot, Fatoumata Gnacko, Daniel Moukouanga, Mikaël Lucas, Soazig Guyomarc'h, Jonathan A Atkinson

Front Plant Sci· July 2016

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