Publications by authors named "Jonathan B Puritz"

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Genome Assembly of a Living Fossil, the Atlantic Horseshoe Crab Limulus polyphemus, Reveals Lineage-Specific Whole-Genome Duplications, Transposable Element-Based Centromeres, and a ZW Sex Chromosome System.
Kate R Castellano, Michelle L Neitzey, Andrew Starovoitov, Gabriel A Barrett, Noah M Reid, Jonathan B Puritz

Mol Biol Evol· February 2025

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A second unveiling: Haplotig masking of the eastern oyster genome improves population-level inference.
Jonathan B Puritz, Ximing Guo, Matthew Hare, Yan He, LaDeana W Hillier

Mol Ecol Resour· January 2024

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Development and Evaluation of High-Density SNP Arrays for the Eastern Oyster Crassostrea virginica.
Ximing Guo, Jonathan B Puritz, Zhenwei Wang, Dina Proestou, Standish Allen

Mar Biotechnol (NY)· February 2023

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Minor Genetic Consequences of a Major Mass Mortality: Short-Term Effects in .
Lauren M Schiebelhut, Melina Giakoumis, Rita Castilho, Paige J Duffin, Jonathan B Puritz

Biol Bull· December 2022

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Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases.
Shelly A Trigg, Yaamini R Venkataraman, Mackenzie R Gavery, Steven B Roberts, Debashish Bhattacharya, Jonathan B Puritz

Mol Ecol Resour· May 2022

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Quantifying dispersal variability among nearshore marine populations.
Katrina A Catalano, Allison G Dedrick, Michelle R Stuart, Jonathan B Puritz, Humberto R Montes

Mol Ecol· May 2021

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Extensive genome-wide duplications in the eastern oyster ().
Tejashree H Modak, Robert Literman, Jonathan B Puritz, Kevin M Johnson, Erin M Roberts

Philos Trans R Soc Lond B Biol Sci· May 2021

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Correction to 'Extraordinarily rapid life-history divergence between sea star species'.
Michael W Hart, Jonathan B Puritz

Proc Biol Sci· July 2020

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Expressed exome capture sequencing: A method for cost-effective exome sequencing for all organisms.
Jonathan B Puritz, Katie E Lotterhos

Mol Ecol Resour· November 2018

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Decimation by sea star wasting disease and rapid genetic change in a keystone species, .
Lauren M Schiebelhut, Jonathan B Puritz, Michael N Dawson

Proc Natl Acad Sci U S A· July 2018

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These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists.
Shannon J O'Leary, Jonathan B Puritz, Stuart C Willis, Christopher M Hollenbeck, David S Portnoy

Mol Ecol· July 2018

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Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage.
Stuart C Willis, Christopher M Hollenbeck, Jonathan B Puritz, John R Gold, David S Portnoy

Mol Ecol Resour· September 2017

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Life-history predicts past and present population connectivity in two sympatric sea stars.
Jonathan B Puritz, Carson C Keever, Jason A Addison, Sergio S Barbosa, Maria Byrne

Ecol Evol· June 2017

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Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences.
Jonathan B Puritz, John R Gold, David S Portnoy

Sci Rep· October 2016

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Demystifying the RAD fad.
Jonathan B Puritz, Mikhail V Matz, Robert J Toonen, Jesse N Weber, Daniel I Bolnick

Mol Ecol· December 2014

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dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms.
Jonathan B Puritz, Christopher M Hollenbeck, John R Gold

PeerJ· June 2014

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ezRAD: a simplified method for genomic genotyping in non-model organisms.
Robert J Toonen, Jonathan B Puritz, Zac H Forsman, Jonathan L Whitney, Iria Fernandez-Silva

PeerJ· November 2013

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Shallow gene pools in the high intertidal: extreme loss of genetic diversity in viviparous sea stars (Parvulastra).
Carson C Keever, Jonathan B Puritz, Jason A Addison, Maria Byrne, Richard K Grosberg

Biol Lett· October 2013

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Next-generation sequencing for high-throughput molecular ecology: a step-by-step protocol for targeted multilocus genotyping by pyrosequencing.
Jonathan B Puritz, Robert J Toonen

Methods Mol Biol· September 2013

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The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers.
Kimberly R Andrews, William F Perrin, Marc Oremus, Leszek Karczmarski, Brian W Bowen, Jonathan B Puritz

Mol Ecol· May 2013

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Extraordinarily rapid life-history divergence between Cryptasterina sea star species.
Jonathan B Puritz, Carson C Keever, Jason A Addison, Maria Byrne, Michael W Hart

Proc Biol Sci· October 2012

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Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms.
Jonathan B Puritz, Jason A Addison, Robert J Toonen

PLoS One· August 2012

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Coastal pollution limits pelagic larval dispersal.
Jonathan B Puritz, Robert J Toonen

Nat Commun· August 2011

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Defining Boundaries for Ecosystem-Based Management: A Multispecies Case Study of Marine Connectivity across the Hawaiian Archipelago.
Robert J Toonen, Kimberly R Andrews, Iliana B Baums, Christopher E Bird, Gregory T Concepcion, Jonathan B Puritz

J Mar Biol· January 2011

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Discordant distribution of populations and genetic variation in a sea star with high dispersal potential.
Carson C Keever, Jennifer Sunday, Jonathan B Puritz, Jason A Addison, Robert J Toonen

Evolution· December 2009

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