Publications by authors named "Jonathan D Ip"

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Enhanced surveillance, subtyping, and host adaptation analysis reveal genotype-wide zoonotic potential of rat hepatitis E virus.
Kelvin Hon-Yin Lo, Siu-Fung Stanley Ho, Estie Hon-Kiu Shun, Shusheng Wu, Cyril Chik-Yan Yip, Jonathan Daniel Ip

J Hepatol· January 2026

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Enhanced replication of a contemporary avian influenza A H9N2 virus in human respiratory organoids.
Lin-Lei Chen, Jonathan Daniel Ip, Wan-Mui Chan, Stephanie Joy-Ann Lam, Rhoda Cheuk-Ying Leung, Cyril Chik-Yan Yip

Emerg Microbes Infect· December 2025

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Avian influenza virus A(H5N1) genotype D1.1 is better adapted to human nasal and airway organoids than genotype B3.13.
Xiaojuan Zhang, Stephanie Joy-Ann Lam, Lin-Lei Chen, Carol Ho-Yan Fong, Wan-Mui Chan, Jonathan Daniel Ip

J Infect Dis· November 2025

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Tracking SARS-CoV-2 RNA in the air: Lessons from a COVID-19 outbreak in an infirmary unit.
Shuk-Ching Wong, Jonathan Hon-Kwan Chen, Pui-Hing Chau, Wai-On Tam, Germaine Kit-Ming Lam, Jonathan Daniel Ip

Am J Infect Control· March 2025

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Human Circovirus in Patients with Hepatitis, Hong Kong.
Shusheng Wu, Cyril Chik-Yan Yip, Jianwen Situ, Zhiyu Li, Stanley Siu-Fung Ho, Jonathan Daniel Ip

Emerg Infect Dis· December 2024

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Corrigendum to "The significance of recurrent de novo amino acid substitutions that emerged during chronic SARS-CoV-2 infection: an observational study" [eBioMedicine, 2024;107:105273].
Jonathan Daniel Ip, Wing-Ming Chu, Wan-Mui Chan, Allen Wing-Ho Chu, Rhoda Cheuk-Ying Leung

EBioMedicine· October 2024

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Ultrapotent class I neutralizing antibodies post Omicron breakthrough infection overcome broad SARS-CoV-2 escape variants.
Mengxiao Luo, Runhong Zhou, Bingjie Tang, Hang Liu, Bohao Chen, Jonathan Daniel Ip

EBioMedicine· October 2024

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The significance of recurrent de novo amino acid substitutions that emerged during chronic SARS-CoV-2 infection: an observational study.
Jonathan Daniel Ip, Wing-Ming Chu, Wan-Mui Chan, Allen Wing-Ho Chu, Rhoda Cheuk-Ying Leung

EBioMedicine· September 2024

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Identification of novel small-molecule inhibitors of SARS-CoV-2 by chemical genetics.
Chris Chun-Yiu Chan, Qian Guo, Jasper Fuk-Woo Chan, Kaiming Tang, Jian-Piao Cai, Jonathan Daniel Ip

Acta Pharm Sin B· September 2024

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Global emergence of neuraminidase inhibitor-resistant influenza A(H1N1)pdm09 viruses with I223V and S247N mutations: implications for antiviral resistance monitoring.
Rhoda Cheuk-Ying Leung, Jonathan Daniel Ip, Lin-Lei Chen, Wan-Mui Chan, Kelvin Kai-Wang To

Lancet Microbe· July 2024

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Characterizing fitness and immune escape of SARS-CoV-2 EG.5 sublineage using elderly serum and nasal organoid.
Xiaojuan Zhang, Stephanie Joy-Ann Lam, Jonathan Daniel Ip, Carol Ho-Yan Fong, Allen Wing-Ho Chu

iScience· May 2024

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Investigation of air dispersal during a rhinovirus outbreak in a pediatric intensive care unit.
Shuk-Ching Wong, Cyril C-Y Yip, Jonathan H-K Chen, Lithia L-H Yuen, Christine H-Y AuYeung, Jonathan D Ip

Am J Infect Control· April 2024

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Development and Evaluation of an In-House Real-Time RT-PCR Targeting nsp10 Gene for SARS-CoV-2 Detection.
Cyril Chik-Yan Yip, Jane Hau-Ching Poon, Kit-Hang Leung, Wan-Mui Chan, Jonathan Daniel Ip

Int J Mol Sci· March 2024

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The first case of monkeypox in Hong Kong presenting as infectious mononucleosis-like syndrome.
Kelvin Hei-Yeung Chiu, Shuk-Ching Wong, Anthony Raymond Tam, Siddharth Sridhar, Cyril Chik-Yan Yip, Jonathan Daniel Ip

Emerg Microbes Infect· December 2023

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Humoral and cellular immunity against different SARS-CoV-2 variants in patients with chronic kidney disease.
Desmond Yat-Hin Yap, Carol Ho-Yan Fong, Xiaojuan Zhang, Jonathan Daniel Ip, Wan-Mui Chan

Sci Rep· November 2023

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Global prevalence of SARS-CoV-2 3CL protease mutations associated with nirmatrelvir or ensitrelvir resistance.
Jonathan Daniel Ip, Allen Wing-Ho Chu, Wan-Mui Chan, Rhoda Cheuk-Ying Leung, Syed Muhammad Umer Abdullah

EBioMedicine· May 2023

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Omicron sublineage recombinant XBB evades neutralising antibodies in recipients of BNT162b2 or CoronaVac vaccines.
Xiaojuan Zhang, Lin-Lei Chen, Jonathan Daniel Ip, Wan-Mui Chan, Ivan Fan-Ngai Hung

Lancet Microbe· March 2023

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Development and Validation of a Novel COVID-19 nsp8 One-Tube RT-LAMP-CRISPR Assay for SARS-CoV-2 Diagnosis.
Cyril Chik-Yan Yip, Siddharth Sridhar, Wan-Mui Chan, Jonathan Daniel Ip, Allen Wing-Ho Chu

Microbiol Spectr· December 2022

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Probable Animal-to-Human Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Delta Variant AY.127 Causing a Pet Shop-Related Coronavirus Disease 2019 (COVID-19) Outbreak in Hong Kong.
Jasper Fuk Woo Chan, Gilman Kit Hang Siu, Shuofeng Yuan, Jonathan Daniel Ip, Jian Piao Cai, Cyril Chik Yan Yip

Clin Infect Dis· August 2022

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Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Omicron Subvariant BA.2 in a Single-Source Community Outbreak.
Vincent Chi Chung Cheng, Jonathan Daniel Ip, Allen Wing Ho Chu, Anthony Raymond Tam, Wan Mui Chan, Patrick Ip

Clin Infect Dis· August 2022

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Risk Factors for Slow Viral Decline in COVID-19 Patients during the 2022 Omicron Wave.
Xin Li, Anthony Raymond Tam, Wing-Ming Chu, Wan-Mui Chan, Jonathan Daniel Ip, Cyril Chik-Yan Yip

Viruses· August 2022

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Pathogenicity, transmissibility, and fitness of SARS-CoV-2 Omicron in Syrian hamsters.
Shuofeng Yuan, Zi-Wei Ye, Ronghui Liang, Kaiming Tang, Anna Jinxia Zhang, Jonathan Daniel Ip, Cyril Chik-Yan Yip

Science· July 2022

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Contribution of low population immunity to the severe Omicron BA.2 outbreak in Hong Kong.
Lin-Lei Chen, Syed Muhammad Umer Abdullah, Wan-Mui Chan, Brian Pui-Chun Chan, Jonathan Daniel Ip

Nat Commun· June 2022

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Outbreak investigation of airborne transmission of Omicron (B.1.1.529) - SARS-CoV-2 variant of concern in a restaurant: Implication for enhancement of indoor air dilution.
Vincent Chi-Chung Cheng, David Christopher Lung, Shuk-Ching Wong, Albert Ka-Wing Au, Qun Wang, Jonathan Daniel Ip

J Hazard Mater· May 2022

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Rapid Diagnosis of Infection by Next-Generation Sequencing: A Case Report.
Fanfan Xing, Simon K F Lo, Yuanchao Ma, Jonathan Daniel Ip, Wan-Mui Chan

Front Med (Lausanne)· February 2022

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