Publications by authors named "Jonathan D Marotti"

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Seven-year retrospective review of medical microbiologist consultations on cytology specimens at an academic medical center.
Jonathan D Marotti, Edward J Gutmann, Nicole A Loeven, Xiaoying Liu, Darcy A Kerr

Am J Clin Pathol· November 2025

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Reply to: "Comments on the paper 'Extensive epigenomic dysregulation is a hallmark of homologous recombination deficiency in triple-negative breast cancer' by Y. Chen et al.".
Youdinghuan Chen, Lucas A Salas, Jonathan D Marotti, Nicole P Jenkins, Chao Cheng

Int J Cancer· August 2025

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Surgical management and long-term follow-up of a traumatic intrastromal epithelial cyst.
Andrew J Catomeris, Michael E Zegans, Jonathan D Marotti, Erin M Salcone

J AAPOS· August 2025

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Quantitative proteomics analysis of triple-negative breast cancers.
Natasha C Mariano, Jonathan D Marotti, Youdinghuan Chen, Barbara Karakyriakou, Roberto Salgado

NPJ Precis Oncol· April 2025

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Extensive epigenomic dysregulation is a hallmark of homologous recombination deficiency in triple-negative breast cancer.
Youdinghuan Chen, Lucas A Salas, Jonathan D Marotti, Nicole P Jenkins, Chao Cheng

Int J Cancer· March 2025

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Oxidative Phosphorylation Is a Metabolic Vulnerability of Endocrine Therapy-Tolerant Persister Cells in ER+ Breast Cancer.
Steven Tau, Mary D Chamberlin, Huijuan Yang, Jonathan D Marotti, Patricia C Muskus

Cancer Res· March 2025

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Chondrolipoma of the Breast: A Myofibroblastoma Variant or a Distinct Lesion?
Adrienne A Workman, Donald C Green, Edward G Hughes, Parth S Shah, Jeffrey M Cloutier, Jonathan D Marotti

Int J Surg Pathol· December 2024

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A multi-model approach integrating whole-slide imaging and clinicopathologic features to predict breast cancer recurrence risk.
Manu Goyal, Jonathan D Marotti, Adrienne A Workman, Graham M Tooker, Seth K Ramin

NPJ Breast Cancer· October 2024

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Endocrine persistence in ER+ breast cancer is accompanied by metabolic vulnerability in oxidative phosphorylation.
Steven Tau, Mary D Chamberlin, Huijuan Yang, Jonathan D Marotti, Alyssa M Roberts

bioRxiv· September 2024

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Does ROSE matter? Evaluation of final diagnostic, PD-L1 immunohistochemistry, and molecular testing yields of CT-guided lung biopsies performed before and after the onset of the COVID-19 pandemic.
Emma B Jennings, Robert B Percarpio, Laura J Tafe, Eugene Demidenko, Joshua Levy, Jonathan D Marotti

J Am Soc Cytopathol· June 2024

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Guar beans in a peritoneal fluid sample.
Edward J Gutmann, Jonathan D Marotti

Cytopathology· May 2024

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Periductal Stromal Tumor of the Breast with a Promoter Mutation: First Case Report with Comprehensive Molecular Analysis.
Blaire Anderson, Jonathan D Marotti, Joel A Lefferts, Kristen E Muller

Int J Surg Pathol· December 2023

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Use of molecular testing results to analyze the overuse of atypia of undetermined significance in thyroid cytology.
Daniel Martinez Coconubo, Joshua J Levy, Darcy A Kerr, Louis J Vaickus, Laura Vidis, Jonathan D Marotti

J Am Soc Cytopathol· November 2023

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Sixteen-Year Institutional Review of Magnetic Resonance Imaging-Guided Breast Biopsies: Trends in Histologic Diagnoses With Radiologic Correlation.
Samaneh A Motanagh, Dennis Dwan, Nasim Azizgolshani, Kristen E Muller, Roberta M diFlorio-Alexander, Jonathan D Marotti

Breast Cancer (Auckl)· November 2023

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Large-scale validation study of an improved semiautonomous urine cytology assessment tool: AutoParis-X.
Joshua J Levy, Natt Chan, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann

Cancer Cytopathol· October 2023

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Examining longitudinal markers of bladder cancer recurrence through a semiautonomous machine learning system for quantifying specimen atypia from urine cytology.
Joshua J Levy, Natt Chan, Jonathan D Marotti, Nathalie J Rodrigues, A Aziz O Ismail

Cancer Cytopathol· September 2023

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Estrogen Therapy Induces Receptor-Dependent DNA Damage Enhanced by PARP Inhibition in ER+ Breast Cancer.
Nicole A Traphagen, Gary N Schwartz, Steven Tau, Alyssa M Roberts, Amanda Jiang, Jonathan D Marotti

Clin Cancer Res· September 2023

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Alternating 17β-Estradiol and Aromatase Inhibitor Therapies Is Efficacious in Postmenopausal Women with Advanced Endocrine-Resistant ER+ Breast Cancer.
Gary N Schwartz, Peter A Kaufman, Karthik V Giridhar, Jonathan D Marotti, Mary D Chamberlin

Clin Cancer Res· August 2023

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Uncovering additional predictors of urothelial carcinoma from voided urothelial cell clusters through a deep learning-based image preprocessing technique.
Joshua J Levy, Xiaoying Liu, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann

Cancer Cytopathol· January 2023

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Large-scale longitudinal comparison of urine cytological classification systems reveals potential early adoption of The Paris System criteria.
Joshua J Levy, Xiaoying Liu, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann

J Am Soc Cytopathol· October 2022

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Using molecular testing to improve the management of thyroid nodules with indeterminate cytology: an institutional experience with review of molecular alterations.
Ryan E Glass, Jonathan D Marotti, Darcy A Kerr, Joshua J Levy, Louis J Vaickus

J Am Soc Cytopathol· April 2022

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Clinicopathological features and BRCA1 and BRCA2 mutation status in a prospective cohort of young women with breast cancer.
Yaileen D Guzmán-Arocho, Shoshana M Rosenberg, Judy E Garber, Hilde Vardeh, Philip D Poorvu, Jonathan D Marotti

Br J Cancer· February 2022

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Differential effects of CD20+ B cells and PD-L1+ immune cells on pathologic complete response and outcome: comparison between inflammatory breast cancer and locally advanced breast cancer patients.
Hugo Arias-Pulido, Ashley Marie Cimino-Mathews, Nabila Chaher, Clifford Ray Qualls, Nancy Joste, Jonathan Douglas Marotti

Breast Cancer Res Treat· December 2021

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Solitary fibrous tumor of the pancreas clinically mimicking a pancreatic neuroendocrine tumor: Cytologic pitfalls when a transgastric approach is utilized.
Jonathan D Marotti, Xiaoying Liu, Sehrish Jamot, Timothy B Gardner, Stuart R Gordon

Diagn Cytopathol· November 2021

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High estrogen receptor alpha activation confers resistance to estrogen deprivation and is required for therapeutic response to estrogen in breast cancer.
Nicole A Traphagen, Sarah R Hosford, Amanda Jiang, Jonathan D Marotti, Brooke L Brauer

Oncogene· May 2021

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